Gene detail

Detail information of GWHGAAEX007544/evm.TU.scaffold_2.418

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1012	Ca2+-dependent lipid-binding protein CLB1/vesicle protein vp115/Granuphilin A, contains C2 domain
nr	gi\|743832896\|ref\|XP_010935106.1\|	PREDICTED: synaptotagmin-2-like [Elaeis guineensis]
Swissprot	tr\|B6ETT4\|SYT2_ARATH	Synaptotagmin-2
trEMBL	tr\|Q6ETC4\|Q6ETC4_ORYSJ	Putative CLB1 protein {ECO:0000313\|EMBL:BAD28096.1}
TAIR	AT1G20080	Calcium-dependent lipid-binding (CaLB domain) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000010	15058131	15076881	+

Transcript Sequence
>GWHTAAEX007544 TACCGTTCCACCTCTTCCTCACCGCATGTTAATATGTTATTGATAATAAGAAAAATAATATTTTTTTCTATTAGCATCATTATTATTAGCATTCAAGGCGATTTAATTAGCAGTAAAAATTACGTCTTTTTTCCGTTTTGATATGCTCCATAAAAATGGTCGCCTCATCATCGGTCCCACGACATACGTGGGCGTTACCGACACTCTTTCCACCCGTTTCAGCACACGGCCTCTTCAGTTCTCACTGTATTTATTCTACAATCCCTTTCCATTATTCGTTTATCCATTATTTGAATAATCTGCGGAAAGAGTGGGAGAGTTATGGATACTTCCGGAAAATTCTGCCTTTTCAACTAAGGATTAAAAAGGTTTGGTTAGGGTTTCTCAATACGGTGGGGGAAAATTTTGTTCTTTTCTTAGCCTTTGAGTTTTGAACGGTTCTTTCTTGATAAAAGGAGTTAGCGGAAAGGGTGAGTTTTGTGCTTTATTTAGAAAAGGATTTGGGATGGGTTTTGTCAGCTCTTTGTTGGGAACTTTTGGATTCGGGATTGGAATTTCTGCTGGGATTGTCATTGGTTACTATCTCTTCATCTATTTCCAGCCCACAGATGTGAAGGATCCTGTAATTCGGCCACTTGTCGAGCATGATTCACAATCACTGGAAAGAATGCTTCCTGAGATTCCTTTATGGGTCAAAAACCCAGACTTCGACAGGGTTGATTGGCTAAACAAGTTTATAGAGAACCTGTGGCCATATTTGGATAAGGCAATATGCAAAACTGCAAAGGAGATTGCAAAGCCAATTATTGCTGATAATACTGCCAAGTATAAAATTGATTCAGTTGAGTTTCAAACACTGACCTTAGGTTCATTACCACCTACCTTTCAAGGTATAAAAGTTTATATCACTGAAGAGAAGGAATTGATTTTGGAGCCAGCACTGAAGTGGGCTGGAAATCCTAATGTAACTGTTGTTGTCAAGGCCTTCGGTTTAAAAGCATCTGCACAGGTCATAGATTTGCAAGTATTTGCTATACCACGAGTCACCTTGAAGCCTCTTGTTCCTAGTTTTCCTTGTTTTGCGACAATAATTGTCTCTCTAATGGAGAAGCCACACGTTGACTTTGGTTTAAAACTTTTTGGAGCCGATCTTATGTCAATACCAGGAATTTATAAGATCATCCAGGATATTATAAAGAATCAGATTGCAAGCATGTATCTTTGGCCAAAAGCTCTTGAAATTCCAATTATGGATCTTTCAAGTGCCATGAAGAAGCCTGTTGGAATACTTCATGTGAAAGTAATAAGAGCATATAAACTGAAAAAGAAGGATCTGTTGGGCAAATCAGACCCATATGTAAAGCTGAAGCTTACAGAAGAAAAGCTCCCATCAAAGAAAACGACAGTGAAGCGCAGCAACCTCAATCCTGAATGGAATGAGGAATTCAGATTGGTAGTCAAAGACCCAATGTCTCAAGCCCTTGAGATTATTGTATATGATTGGGAAAAGGTTGGGAAACATGATAAAATTGGCATGCAAATTATTCCATTGAAGAATCTTACTCGGGATGAGCCTAAATCATTGACTCTCGAGCTTCTAAAAAATATGGGTCAAATTGAGGCCGACGAGAAATCACGCGGCCAAATTGTTTTGGAGTTGATATACAGTCCTTTCAAGGAAGATATTATCCCCAATGAAGCCAGCGATGATGCCGGCAATACAGAGAAGGCTCCCGAAGGCACTCCCGCTGGCGGAGGCTTGTTGGTTGTTACGATTCACGAAGCTGAAGATCTCGAGGGAAAACATCACACCAACCCGTATGCACGGATTATTTTCAAAGGAGAAGAGCGGAAGACAAAGCACATTAAAAAAAATAGGGATCCACGATGGGAAGAAGAGTTTCAATTTGTATGCGAGGAACCTCCCGTGCATGATAAATTGCAAGTGGAAGTCCATAGCAAGCCATCAAGTATTGGCATTCACTCAAAGGAAAGTTTGGGCTATGTTGTCATCAACCTTGCTGATGCCATCTCGAATAAGAGAATCAATGAGAAGTATCATCTGATTGACTCAAAAAATGGTAAGATTCAGGTTGAGTTACAATGGAGGACTTCCTAGAGAGAGAGATCAACTTCCAACTTTGTTCTTATTGATTTTATTTAAATAAATATTGTGTATTTATTGTATATAATTTATGTGAGAATTTACCTCGTAATCTTTTAGGTAATTGCACTGTGCCTTCTTTTTTGTGATATGCATATTTATTGAATCTGTTATAAAATTCATTTCTATGTTTCTGCACCCTTTACATCTCTTAATAAATATGTTTTTTCGTGC

Network for GWHGAAEX007544

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17047.4	SMP_LBD	67	248	1.60E-16
PF00168.29	C2	260	362	1.80E-24
PF00168.29	C2	419	520	9.30E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008289	Molecular Function	lipid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.520
SRP064423	SRR2545915	Juvenile tuber	68.470
SRP108465	SRR5643513	five period of Gastrodia elata	27.570
	SRR5643514	five period of Gastrodia elata	32.180
	SRR5643515	five period of Gastrodia elata	35.710
	SRR5643524	five period of Gastrodia elata	32.740
	SRR5643525	five period of Gastrodia elata	38.910
	SRR5643528	five period of Gastrodia elata	54.380
	SRR5643658	five period of Gastrodia elata	50.900
	SRR5643659	five period of Gastrodia elata	38.530
	SRR5643660	five period of Gastrodia elata	35.550
	SRR5643661	five period of Gastrodia elata	35.000
	SRR5643662	five period of Gastrodia elata	29.160
	SRR5643663	five period of Gastrodia elata	40.510
	SRR5643664	five period of Gastrodia elata	30.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	26.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.100
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.840
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.320
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	28.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.340
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.500
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.500
SRP279888	Gastro	Gastrodia elata tuber	37.57
	Juven	Juvenile tuber	16.84
	Mother_Gastro	Mother tuber of Gastrodia elata	18.38
	Mother_Juven	Mother tuber of Juvenile	13.02