Detail information of GWHGAAEX007551/evm.TU.scaffold_2.427


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21901.00E-134PolyC-binding proteins alphaCP-1 and related KH domain proteins
nrgi|743827343|ref|XP_010933565.1|0PREDICTED: poly(rC)-binding protein 3-like [Elaeis guineensis]
Swissprottr|P58223|Y4837_ARATH8.00E-17KH domain-containing protein At4g18375
trEMBLtr|F6GXK2|F6GXK2_VITVI4.00E-172Putative uncharacterized protein {ECO:0000313|EMBL:CCB44688.1}
TAIRAT4G260001.00E-134RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000000101531264915333132+
Transcript Sequence

Network for GWHGAAEX007551

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_1621148.70E-10
PF00013.28KH_11492091.90E-08
PF00013.28KH_13253892.90E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms205.430
SRR2545915Juvenile tuber232.230
SRP108465SRR5643513five period of Gastrodia elata169.520
SRR5643514five period of Gastrodia elata170.170
SRR5643515five period of Gastrodia elata149.720
SRR5643524five period of Gastrodia elata152.000
SRR5643525five period of Gastrodia elata92.630
SRR5643528five period of Gastrodia elata85.730
SRR5643658five period of Gastrodia elata72.050
SRR5643659five period of Gastrodia elata203.020
SRR5643660five period of Gastrodia elata232.620
SRR5643661five period of Gastrodia elata218.970
SRR5643662five period of Gastrodia elata202.350
SRR5643663five period of Gastrodia elata201.000
SRR5643664five period of Gastrodia elata235.230
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1252.120
SRR6049655Rhizomagastrodiae_C368-T10_good_1205.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1229.230
SRR6049657Rhizomagastrodiae_C368-T07_good_1281.570
SRR6049658Rhizomagastrodiae_C368-T04_good_1256.850
SRR6049659Rhizomagastrodiae_C368-T04_good_1275.540
SRR6049660Rhizomagastrodiae_C368-T01_good_1270.610
SRR6049661Rhizomagastrodiae_C368-T04_good_1248.310
SRR6049662Rhizomagastrodiae_C368-T01_good_1241.220
SRR6049663Rhizomagastrodiae_C368-T01_good_1256.560
SRR6049664Rhizomagastrodiae_C368-T10_good_1224.050
SRR6049665Rhizomagastrodiae_C368-T10_good_1224.050
SRP279888GastroGastrodia elata tuber 348.99
JuvenJuvenile tuber425.32
Mother_GastroMother tuber of Gastrodia elata 97.83
Mother_JuvenMother tuber of Juvenile 218.21