Detail information of GWHGAAEX007553/evm.TU.scaffold_2.430
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|320159746|ref|YP_004172970.1| | 4.00E-46 | prephenate dehydratase [Anaerolinea thermophila UNI-1] |
| KOG | KOG2797 | 4.00E-60 | Prephenate dehydratase |
| nr | gi|672143012|ref|XP_008795372.1| | 1.40E-134 | PREDICTED: arogenate dehydratase 3, chloroplastic-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SGD6|AROD6_ARATH | 1.00E-60 | Arogenate dehydratase/prephenate dehydratase 6, chloroplastic (Precursor) |
| trEMBL | tr|Q8H0A1|Q8H0A1_ORYSJ | 3.00E-121 | cDNA clone:J013110M24, full insert sequence {ECO:0000313|EMBL:BAG94323.1} |
| TAIR | AT1G08250 | 4.00E-60 | arogenate dehydratase 6 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 15442912 | 15444595 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007553
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00800.17 | PDT | 37 | 212 | 1.00E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009094 | Biological Process | L-phenylalanine biosynthetic process |
| GO:0004664 | Molecular Function | prephenate dehydratase activity |
| GO:0004106 | Molecular Function | chorismate mutase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.080 |
| SRR2545915 | Juvenile tuber | 3.500 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.690 |
| SRR5643514 | five period of Gastrodia elata | 9.190 | |
| SRR5643515 | five period of Gastrodia elata | 13.620 | |
| SRR5643524 | five period of Gastrodia elata | 12.000 | |
| SRR5643525 | five period of Gastrodia elata | 13.570 | |
| SRR5643528 | five period of Gastrodia elata | 14.640 | |
| SRR5643658 | five period of Gastrodia elata | 13.500 | |
| SRR5643659 | five period of Gastrodia elata | 9.560 | |
| SRR5643660 | five period of Gastrodia elata | 8.700 | |
| SRR5643661 | five period of Gastrodia elata | 10.910 | |
| SRR5643662 | five period of Gastrodia elata | 13.970 | |
| SRR5643663 | five period of Gastrodia elata | 10.420 | |
| SRR5643664 | five period of Gastrodia elata | 7.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 23.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.160 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.770 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.800 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.01 |
| Juven | Juvenile tuber | 9.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.04 | |
| Mother_Juven | Mother tuber of Juvenile | 16.65 |