Detail information of GWHGAAEX007555/evm.TU.scaffold_2.432
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332796431|ref|YP_004457931.1| | 1.00E-54 | DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1] |
| KOG | KOG0260 | 0 | RNA polymerase II, large subunit |
| nr | gi|695047159|ref|XP_009411449.1| | 0 | PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9LQ02|NRPD1_ARATH | 0 | DNA-directed RNA polymerase IV subunit 1 |
| trEMBL | tr|J3MZZ4|J3MZZ4_ORYBR | 0 | DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279} |
| TAIR | AT1G63020_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000010 | 15458622 | 15532557 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007555
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04997.11 | RNA_pol_Rpb1_1 | 81 | 355 | 1.90E-13 |
| PF00623.19 | RNA_pol_Rpb1_2 | 413 | 562 | 2.30E-27 |
| PF04983.17 | RNA_pol_Rpb1_3 | 567 | 714 | 3.60E-12 |
| PF05000.16 | RNA_pol_Rpb1_4 | 799 | 841 | 1.50E-07 |
| PF11523.7 | DUF3223 | 1435 | 1508 | 3.70E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006351 | Biological Process | transcription, DNA-templated |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.750 |
| SRR2545915 | Juvenile tuber | 9.510 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.190 |
| SRR5643514 | five period of Gastrodia elata | 5.980 | |
| SRR5643515 | five period of Gastrodia elata | 6.180 | |
| SRR5643524 | five period of Gastrodia elata | 6.000 | |
| SRR5643525 | five period of Gastrodia elata | 6.860 | |
| SRR5643528 | five period of Gastrodia elata | 7.020 | |
| SRR5643658 | five period of Gastrodia elata | 5.720 | |
| SRR5643659 | five period of Gastrodia elata | 5.850 | |
| SRR5643660 | five period of Gastrodia elata | 6.450 | |
| SRR5643661 | five period of Gastrodia elata | 5.470 | |
| SRR5643662 | five period of Gastrodia elata | 5.110 | |
| SRR5643663 | five period of Gastrodia elata | 6.310 | |
| SRR5643664 | five period of Gastrodia elata | 5.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.800 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 7.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.520 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.560 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.770 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.770 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 9.50 |
| Juven | Juvenile tuber | 8.36 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.59 | |
| Mother_Juven | Mother tuber of Juvenile | 11.08 |