Gene detail

Detail information of GWHGAAEX007568/evm.TU.scaffold_20.32

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4270	2.00E-153	GTPase-activator protein
nr	gi\|566204048\|ref\|XP_002321041.2\|	2.21E-160	hypothetical protein POPTR_0014s13090g [Populus trichocarpa]
Swissprot	tr\|F4JI46\|RGAP2_ARATH	7.00E-154	Rho GTPase-activating protein 2
trEMBL	tr\|B9I9Y6\|B9I9Y6_POPTR	8.00E-161	Uncharacterized protein {ECO:0000313\|EMBL:EEE99356.2}
TAIR	AT4G03100	2.00E-153	Rho GTPase activating protein with PAK-box/P21-Rho-binding domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	1512593	1518381	+

Transcript Sequence
>GWHTAAEX007568 CAGCTTTATAGGAGCTGCTTCAAATTAAAAACTCTTGAGAGAACTTACCGCACAACGTTCGTCTCTCTTCAGTCTTGGCTCCAGTTCCCGAAGTAGAACCAACTTCCGGAGAGAGAAGTTGAGAGAGCGAAAATGGCTGGCTTTGTAATAATCTTGAGCGGATGCGTAGAAGAAGAAACTGCAAAGGAGGCGACCCAAGGAGAGGTGAAGGAGAGAGAAGGGCAGGTTTCTCTGCTTGCCTTTCTCATGGCAGCAATTCGGAGATCGGTTGTTGGATGCAGGCTGGTGGATCGGCGGGGAGTTGATGCCACTCCTGCCTTGGCTCTTGCCCATATGGAGATTGGTTGGCCGACTGACGTGCAGCACGTTTCCCATGTCACATTTGACAGATTTCATGGATTTGTCGGTCTTCCGGTTGAGTTCGAGGTCGACATACCATGCCGCGTTCCGAGTGCAAGTGCCAGTGTATTTGGCGTCTCAGCTGAATCGATGCAGTGTTGTTTTGATTCAAAAGGCAATAGCGTGCCAATTATTCTATTGCTTATGCAGGAGAGGTTGTATTCTCAGGGAGGGCTAAAGGCAGAGGGGATATTTCGCATAAATCCGGAAAATAGCAAAGAGGAAGAGTTGAGAGATCAGCTGAACAAGGGCATTGTACCCGAAGATATTGAAGTTCACTGTTTGGCTAGTCTTATAAAGGCTTGGTTCAGAGAACTTCCAGAGGGGGTATTAGATGGACTTTCTCCCGAACAAGTTCTTCAATGCAACACAGAGGAGCAATGCATGGAGCTTGTGCAGCTCCTCCACCCTACACAGGCTGCTCTTCTCAGTTGGGCTATTGAACTCATGGCTGATGTTGTTGAAGAGGAGGAATTGAATAAAATGAACGCAAGAAACATAGCCATGGTCTTTGCTCCGAATATGACTCAGATGTCTGATCCCTTAACAGCTTTGATGCATGCTGTACAAGTAATGAATCTGCTCAAGACCCTGATCTTAAAACTCCTTAGAGAAAGAGAAAATGCTTCCATTGGAGGCTTTTCTCCAAGCTATTCATCTAAATCATCACTTGGTTGCCATAGTGAAGAGATGCATGCTAGCGAGAGGGAAATCACTTCTGACGATGAATACAATAGCTCTAATGCAGATGTCAGTCATGATGATGATGATGATGAGATTAAAGCAGAAGTTGATGGTGAAAAGTTTATTGGAGATTCCTTCAACAGCAGTCTAACAAAGTTAAGCTTCCGAAACTTCGATCCTGAGTTGAGCTCTTGCAGAGAAATTGTATTGTTTGACATGGAGACAATATCCCAACACAAACAAATTGGAGCTGGTGATTTTGAAGTCTGAGATTTCATCATATTATTCATATTAATCTCCAATGCGGATGCCTTATATTATGATTTTGGTGCCTACAATGTTGATTTTGTTTTTGGAGACGAGGAAGGAGGCAGGGCTCATCTCTTTTGCTGTATGGAAAACTCAGCAAATCTTGGCAATTGAATGGATGCGTATTCATGTACTGATTGTGCTTTGGGATATTACACTGGGATTGCAACCGACAAAGTTCTTAGCTCCACTTTTACTCACCCTTACAAGAGAGCCCTGAGTGCTGAGCTTATTCGACCTCAATTTCAATTTCTTTATACTGTACTCTTCTGTTAAGGTTTGTTAACTGATGCTTATCAATCATCTTCTAATTTTTAGCCTTTGTTTATTTTGCAACCTTTTATTCTTTTGAATGAATTGGGC

Network for GWHGAAEX007568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00786.27	PBD	69	98	3.50E-05
PF00620.26	RhoGAP	132	267	1.70E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0007165	Biological Process	signal transduction

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.930
SRP064423	SRR2545915	Juvenile tuber	3.140
SRP108465	SRR5643513	five period of Gastrodia elata	4.660
	SRR5643514	five period of Gastrodia elata	4.430
	SRR5643515	five period of Gastrodia elata	3.710
	SRR5643524	five period of Gastrodia elata	5.420
	SRR5643525	five period of Gastrodia elata	0.620
	SRR5643528	five period of Gastrodia elata	0.410
	SRR5643658	five period of Gastrodia elata	0.690
	SRR5643659	five period of Gastrodia elata	0.640
	SRR5643660	five period of Gastrodia elata	1.060
	SRR5643661	five period of Gastrodia elata	0.620
	SRR5643662	five period of Gastrodia elata	0.450
	SRR5643663	five period of Gastrodia elata	0.310
	SRR5643664	five period of Gastrodia elata	0.190
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.320
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.450
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.860
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	13.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.470
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.680
SRP279888	Gastro	Gastrodia elata tuber	0.49
	Juven	Juvenile tuber	2.83
	Mother_Gastro	Mother tuber of Gastrodia elata	2.03
	Mother_Juven	Mother tuber of Juvenile	3.63