Detail information of GWHGAAEX007569/evm.TU.scaffold_20.33


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08003.00E-13FOG: Predicted E3 ubiquitin ligase
nrgi|356546838|ref|XP_003541829.1|1.19E-13PREDICTED: uncharacterized protein LOC100800642 [Glycine max]
Swissprottr|Q7XTV7|HIP1_ORYSJ3.00E-13Probable E3 ubiquitin-protein ligase HIP1
trEMBLtr|I1M338|I1M338_SOYBN4.00E-14Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G34790.1}
TAIRAT1G737603.00E-13RING/U-box superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002615221021523370-
Transcript Sequence

Network for GWHGAAEX007569

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_22192604.50E-12
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms0.100
SRR2545915Juvenile tuber0.000
SRP108465SRR5643513five period of Gastrodia elata0.000
SRR5643514five period of Gastrodia elata0.240
SRR5643515five period of Gastrodia elata0.100
SRR5643524five period of Gastrodia elata0.000
SRR5643525five period of Gastrodia elata0.110
SRR5643528five period of Gastrodia elata0.110
SRR5643658five period of Gastrodia elata0.160
SRR5643659five period of Gastrodia elata0.000
SRR5643660five period of Gastrodia elata0.000
SRR5643661five period of Gastrodia elata0.000
SRR5643662five period of Gastrodia elata0.100
SRR5643663five period of Gastrodia elata0.000
SRR5643664five period of Gastrodia elata0.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_10.000
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_10.000
SRR6049657Rhizomagastrodiae_C368-T07_good_10.000
SRR6049658Rhizomagastrodiae_C368-T04_good_10.000
SRR6049659Rhizomagastrodiae_C368-T04_good_10.000
SRR6049660Rhizomagastrodiae_C368-T01_good_10.000
SRR6049661Rhizomagastrodiae_C368-T04_good_10.000
SRR6049662Rhizomagastrodiae_C368-T01_good_10.000
SRR6049663Rhizomagastrodiae_C368-T01_good_10.000
SRR6049664Rhizomagastrodiae_C368-T10_good_10.000
SRR6049665Rhizomagastrodiae_C368-T10_good_10.000
SRP279888GastroGastrodia elata tuber 0.07
JuvenJuvenile tuber0.11
Mother_GastroMother tuber of Gastrodia elata 0.26
Mother_JuvenMother tuber of Juvenile 0.15