Detail information of GWHGAAEX007571/evm.TU.scaffold_20.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|512552576|ref|YP_008090482.1| | 3.00E-10 | Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Chthonomonas calidirosea T49] |
| KOG | KOG1576 | 1.00E-29 | Predicted oxidoreductase |
| nr | gi|223975591|gb|ACN31983.1| | 1.68E-35 | unknown [Zea mays] |
| Swissprot | tr|O81884|GALDH_ARATH | 3.00E-30 | L-galactose dehydrogenase |
| trEMBL | tr|M0TL98|M0TL98_MUSAM | 1.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P27620_001} |
| TAIR | AT4G33670 | 1.00E-29 | NAD(P)-linked oxidoreductase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 1783830 | 1814789 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007571
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00248.20 | Aldo_ket_red | 24 | 62 | 1.40E-06 |
| PF00248.20 | Aldo_ket_red | 108 | 161 | 3.80E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K17744 | GalDH | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Ascorbate and aldarate metabolism | map00053 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.120 |
| SRR2545915 | Juvenile tuber | 1.790 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.580 |
| SRR5643514 | five period of Gastrodia elata | 3.600 | |
| SRR5643515 | five period of Gastrodia elata | 1.470 | |
| SRR5643524 | five period of Gastrodia elata | 2.420 | |
| SRR5643525 | five period of Gastrodia elata | 6.090 | |
| SRR5643528 | five period of Gastrodia elata | 3.220 | |
| SRR5643658 | five period of Gastrodia elata | 6.840 | |
| SRR5643659 | five period of Gastrodia elata | 5.120 | |
| SRR5643660 | five period of Gastrodia elata | 5.110 | |
| SRR5643661 | five period of Gastrodia elata | 3.740 | |
| SRR5643662 | five period of Gastrodia elata | 2.500 | |
| SRR5643663 | five period of Gastrodia elata | 2.560 | |
| SRR5643664 | five period of Gastrodia elata | 5.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.750 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.590 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.520 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.910 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.660 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.62 |
| Juven | Juvenile tuber | 3.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.76 | |
| Mother_Juven | Mother tuber of Juvenile | 2.77 |