Gene detail

Detail information of GWHGAAEX007573/evm.TU.scaffold_20.37

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|159901275\|ref\|YP_001547522.1\|	3.00E-18	Poly(ADP-ribose) polymerase catalytic subunit [Herpetosiphon aurantiacus DSM 785]
KOG	KOG1037	0	NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins
nr	gi\|672183955\|ref\|XP_008812277.1\|	0	PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O50017\|PARP2_MAIZE	0	Poly [ADP-ribose] polymerase 2
trEMBL	tr\|W9QMK0\|W9QMK0_9ROSA	0	Poly [ADP-ribose] polymerase 2 {ECO:0000313\|EMBL:EXB33507.1}
TAIR	AT4G02390	0	poly(ADP-ribose) polymerase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	1877748	1897354	-

Transcript Sequence
>GWHTAAEX007573 ATAATAATACCAATCAAAACGTATTAGCAGATTGGCAACGTAGCAGGACCAAGCCATTGCAGCCACCGTGCAACTCTTGTTTGGTCCTCTTCTTCCCTCGCAAGCTTCGCTCTTCAGTCTTTGGTCCAGATGCTTTATAAACCGTCCCTCCACTTCCCTTTCAAACCAAATTCAAGGAAGAGGGAGCGAGACAGATGGCTTCGAAGCTCAAAGTCGACGAACTTCGTGCCAAGCTTTCACTTCGAGGCCTAGACACTACCGGCACCAAACCCATTCTTGTCAAGAGGCTTGAAGCTGCTCTGACCGAGGAAGAGGATAAGGAAAAGAAGACCGATCCCGATAAGCCCGCCCCGGCTTCTGACTCGTCAAACGGCCGTGGGAAGAGGAAGAGGGGCTCCTATGTTGATGCTAATGATGGGAATGATGAGGTGGGAGTCTTAGACGAAGAGAAGTTGGTGAAGTATACTGTCCGTGATTTGAGGGCTTTGGCCACCAAATGCGGGGTCTCTGCTACGGGGACGAAGTTGGAGCTTGTCAAGAGACTTTCAGGTGTTGCAGAGATCCCAAAAGAGATCTTGGAAGATGAGGAGAATGAAGGCAATAAAGAAGAGAAATTGATCACTGCTACCATGAAGGGTGGTGCTATGCTGGACCATTGGCTTCCAGATGATATAAAGATGAATTATCATGTCTTGCAAAAAGAAGGGGTTTTCTATGACGCCATGTTGAATCAGACTAATGTTGGAGATAATAATAATAAATTTTATGTGATTCAGGCTTTAGAATCTGATGATGGCTTCAAGTTCATGGTGTACTATAGATGGGGCAGAGTTGGAGTGAAAGGTCAAGATAAATTGCAGGGTCCATTCTTATCATGTGAACATACAATAAGGGAATTTGAAATGAAGTTCTATGAAAAAACAAGGAATTTTTGGTGTAACAAAAAAAACTTTGTTTGTTATCCCAAATGTTATACTTGGTTGGAGATGGATTATAGGGAAGATGGAGAGGAAGAGACAACACCTCAACCCATAAAATCTATTGATGATCAACTTCAAGAGACAAAACTTGAGGGCTGTGTTGCAAAGTTCATTTCGCTTATTTGCAACATAGCTATGATGAAGCAGCAGATGCTTGAGATAGGTTACAATGCTGAGAAATTGCCCCTTGGCAAACTAAGCCAATCGACAATTCTAAAGGGCTATGATGTTTTGAGGAGAATCTCGGATGTGGTTGGGAAAGCAAACAGGAAAACACTTGAAGAATTAAGTGGAGAGTTCTACACTGTGATTCCCCATGACTTCGGTTTTCAAAAGATGTGTGACTTTGTGATTGACACTCCTTATAAAGTAAAATGCAAGTTGGACATGGTCTCAGCTTTGGGGGAGATTGAAATTGCAACTAAGATTCTTAAAGATGGTCCTGAGGCTCTGGAAGACCCTTTGTATTCTCGCTATGAGCAACTGGGCTGTGAAATGACTCCTGTTGAAATTGACTCTAAGGAATTTCATATGATACAGAAGTATTTGAAAAATACTCATGCAGTAACGCATTCAAACTACACGGTTGACATTGTAAGTATAATTAGGGTTTCTAGGAAAAGCGAAATTGAGCGTTTCAAAAAGTTTTCCAAAGTAAAAAATAGAATGCTTCTATGGCATGGTTCTCGATTGTCAAATTGGACCGGCATCCTATCACAAGGATTAAGGATTGCTCCTCCAGAGGCTCCAGTCTCTGGTTACATGTTTGGGAAAGGCGTTTATTTTGCAGATATGTTTTCAAAAAGTGCAAATTACTGCTTCCCAAGTACTGATTCAAATGTTGGGGTGTTACTTCTGTGTGAGGTTGCTTTGGGAGATATGGCCGAGCTGTTGCAGTCAAACTGCAAAGCCAATTGCTTACCCAAGGGAAAGTTGAGTACCAAAGGAGTTGGAAGCACAGAACCGGATATGTCAGAGGCTGAGACGCTTGAAGATGGTTTAGTAGTGCCTCTTGGCTCACCTAAACTGAAGGACGGGGAGAAGGGTTCTTTGCTGTACAACGAATATATAGTATATAACGTAGAGCAGATCAGGATGCGCTACGTATTACAAGTAAAGTTTAACTACAGCATTTGAATTTATTTGACCTGTTTGGCGAGTTGTTCGTATGCTGTAGAAAATTGTTCTCACAACAAAGAGTGGTTTGATGTGCTGAGTTTATATAAATGTATAATGAATATTTTGTCAAGTGAGCGCAAGATGTTTTATTATTCTGTTGTTCTTTGGTGTTGTGCCATATGATGAGCATTTCAATCGAGTCATTTGGAGAGATCTCAATCTCAACTCAGAACGCTGAATTGAGACCATAAAGTTATAGGTAGAGAAAATTTTATTATACAAGCATG

Network for GWHGAAEX007573

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02037.26	SAP	3	36	3.20E-10
PF05406.14	WGR	174	253	7.60E-22
PF02877.13	PARP_reg	291	421	4.20E-36
PF00644.19	PARP	435	636	5.00E-74

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10798	PARP	Base excision repair	map03410
		Apoptosis	map04210
		Apoptosis - fly	map04214
		Necroptosis	map04217
		Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006471	Biological Process	protein ADP-ribosylation
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.950
SRP064423	SRR2545915	Juvenile tuber	29.790
SRP108465	SRR5643513	five period of Gastrodia elata	23.660
	SRR5643514	five period of Gastrodia elata	24.560
	SRR5643515	five period of Gastrodia elata	23.360
	SRR5643524	five period of Gastrodia elata	24.640
	SRR5643525	five period of Gastrodia elata	24.590
	SRR5643528	five period of Gastrodia elata	25.090
	SRR5643658	five period of Gastrodia elata	26.570
	SRR5643659	five period of Gastrodia elata	22.540
	SRR5643660	five period of Gastrodia elata	29.220
	SRR5643661	five period of Gastrodia elata	24.620
	SRR5643662	five period of Gastrodia elata	23.800
	SRR5643663	five period of Gastrodia elata	28.140
	SRR5643664	five period of Gastrodia elata	29.670
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	22.560
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	18.620
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.630
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.140
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	26.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	26.230
SRP279888	Gastro	Gastrodia elata tuber	36.78
	Juven	Juvenile tuber	29.66
	Mother_Gastro	Mother tuber of Gastrodia elata	51.90
	Mother_Juven	Mother tuber of Juvenile	62.33