Gene detail

Detail information of GWHGAAEX007575/evm.TU.scaffold_20.41

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672174326\|ref\|XP_008807323.1\|	1.23E-52	PREDICTED: uncharacterized protein LOC103719724 isoform X2 [Phoenix dactylifera]
trEMBL	tr\|A0A067EZ65\|A0A067EZ65_CITSI	2.00E-50	Uncharacterized protein {ECO:0000313\|EMBL:KDO56206.1}
TAIR	AT2G47700	2.00E-37	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	2290539	2322126	-

Transcript Sequence
>GWHTAAEX007575 ATCCGGAACGCCTGAATCGCCTTCCCAGTCTTGGACTCGTGACCGCTCAACAAAAGCAGCTGCAAAATGGTCATAGAAATAGAAAGAGAGAGACCGAAGACAAAGGGGGCTGTCTCAGAGCTTTCCTTGCCTTGATTTTAGGGCTCTAGTTCAGCAGTCACGAGAGAGAGGGAGAGTGAGAGAGCAATTGTTGGAATCGGAACTTTTGGATTCTGTTCCTCCGGTAATGAGGCTATGGATTTAGGGAATACAGATGTACACGACGGATGCGGAGTCTACCGCGGAGCTGCAGAGTTGGCTCCGCCATGCTCGATCTGCTTTGAGGCGGTAATAAACGACGGTGTACGGTCTACGGCCAAGCTGCAGTGTGGTCACGAGTTTCACCTTGATTGCATTGGTTCAGCCTTCAATGCTAAAGGAATGATGCAGTGCCCCAATTGTCGCACTGTTGAGAAAGGCAACTGGCTTTATGGAAACGGCTTTTACTTCTTACCTGCATTTAACGTGGATGAATGGACACATGATGAAGATTTTAATGATTTTAATTATTTGGAAATGCCTTACGGAGCTCACTGGTGTCCAGTCAGTAGAATAGAAAGGATTACGTCTTCTTTGGAGAACGGGGGTTCATTTCCATCAGTCCCTTGTAAGTCTAAGGATTCGGTGTACTTTGGTATACAAGATGTGAAAACCTGGACTAACTTTCTCTCAAACACAAACTCTGCAGTTCAGGATCCTGCAGGGCATCACATCATCTTCTTCACTGAGTTCCCATCTATTTCAGCTTTTACCGAACCATGTTCTCATTTGTCCGGCTTCGTCCGAGCTCAGACGACGCCTGCCCCTTTTTTTAGCGTTCCCTCTGCTGGCTTTTCTGAATCTAGTTCATATTATCGTCCATGGGGACCACAAGATGTGAACTTTACTGGGGCCCCTTCTCCTCTGAGCTTATCTACTAATGGGGCCCTTTACAATGGCTGGGATCAGTATCAATCAACCCACTCTCAACCTCGAGACATCAGCCAGGCTTATTTTTTGCATGCTCCACTGCCCAGTTCCAGGCTTGAGGATGGTGGCCCGCACAGAACTGGGGCTTTTTTCTATTCCTTCATTGGCAGGCATGGGTCCCATGCTCCATCACCATCCTTGCTTCTTCCACATCGTAATCGACAGTTGCATAATATATCCGGTGAACATTCAATAATAAGTTATGGGGATGTGCTGCAGCCAGGAAATTCACTGGTTTCTCTTAATGGCAGCAGCAAGAGGGACATGATAAACAGTGGAGGTCATCTCCGAAGACAGCTAATTCCCTTTGCTTCAGCACCATCTGCTAACTCAAATGGAGAATATGGTTTATTTTGATAAAAAAATAAATTTACTGTTGCATATAAAAGAGGGCAGGATGTCCTGAGCTGTTCAGGAAACGCTGGATAATCATTGTGTGATTTTTGTTTCTTTTTGCACACATTTTGTAAAATTAGGTATATGCGTTCGTGCTGCCACGTTTGGTGGCTGAAGACCCTTAAAAGATGATCATCTGCAAACGGTCATCATGTTGATTTAGTTATAATCTCCTATTAAACACATGAAAATCTTAAAAATAAAATTGAATCATAAAAAATGTTGAAGTGCATAGTGTGAGGTTCTTTCGGCATGATGATTGGCCGGCTGGTAGCAATGTAGTGATGGATTAAGGCCACTTTGCTTTTACCCAATGTTGGTGGTTTTATCTGAGTGATACTGGGCAGGGTGAATCGGCTAAAGGTGGATTGGATGA

Network for GWHGAAEX007575

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	25	70	1.30E-07

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	47.120
SRP064423	SRR2545915	Juvenile tuber	48.790
SRP108465	SRR5643513	five period of Gastrodia elata	36.770
	SRR5643514	five period of Gastrodia elata	36.370
	SRR5643515	five period of Gastrodia elata	32.480
	SRR5643524	five period of Gastrodia elata	33.920
	SRR5643525	five period of Gastrodia elata	36.370
	SRR5643528	five period of Gastrodia elata	40.630
	SRR5643658	five period of Gastrodia elata	31.370
	SRR5643659	five period of Gastrodia elata	39.260
	SRR5643660	five period of Gastrodia elata	44.600
	SRR5643661	five period of Gastrodia elata	38.300
	SRR5643662	five period of Gastrodia elata	39.650
	SRR5643663	five period of Gastrodia elata	37.820
	SRR5643664	five period of Gastrodia elata	37.500
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	36.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.760
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.790
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.460
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	37.120
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	36.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	33.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.950
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.950
SRP279888	Gastro	Gastrodia elata tuber	58.72
	Juven	Juvenile tuber	54.00
	Mother_Gastro	Mother tuber of Gastrodia elata	35.92
	Mother_Juven	Mother tuber of Juvenile	53.29