Detail information of GWHGAAEX007577/evm.TU.scaffold_20.48


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16941.00E-10060s ribosomal protein L6
nrgi|357464405|ref|XP_003602484.1|3.91E-11560S ribosomal protein L6 [Medicago truncatula]
Swissprottr|P34091|RL6_MESCR9.00E-10760S ribosomal protein L6
trEMBLtr|B7FH28|B7FH28_MEDTR1.00E-115Uncharacterized protein {ECO:0000313|EMBL:AFK37280.1}
TAIRAT1G740501.00E-100Ribosomal protein L6 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002627168702721383-
Transcript Sequence

Network for GWHGAAEX007577

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03868.14Ribosomal_L6e_N7609.40E-10
PF01159.18Ribosomal_L6e1252329.20E-39
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02934RP-L6e, RPL6 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms177.420
SRR2545915Juvenile tuber252.430
SRP108465SRR5643513five period of Gastrodia elata346.830
SRR5643514five period of Gastrodia elata409.450
SRR5643515five period of Gastrodia elata356.460
SRR5643524five period of Gastrodia elata395.280
SRR5643525five period of Gastrodia elata177.970
SRR5643528five period of Gastrodia elata215.380
SRR5643658five period of Gastrodia elata138.830
SRR5643659five period of Gastrodia elata322.360
SRR5643660five period of Gastrodia elata304.040
SRR5643661five period of Gastrodia elata356.790
SRR5643662five period of Gastrodia elata245.510
SRR5643663five period of Gastrodia elata254.780
SRR5643664five period of Gastrodia elata199.610
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1307.770
SRR6049655Rhizomagastrodiae_C368-T10_good_1533.750
SRR6049656Rhizomagastrodiae_C368-T07_good_1397.750
SRR6049657Rhizomagastrodiae_C368-T07_good_1275.600
SRR6049658Rhizomagastrodiae_C368-T04_good_1272.700
SRR6049659Rhizomagastrodiae_C368-T04_good_1210.050
SRR6049660Rhizomagastrodiae_C368-T01_good_1308.000
SRR6049661Rhizomagastrodiae_C368-T04_good_1294.790
SRR6049662Rhizomagastrodiae_C368-T01_good_1478.770
SRR6049663Rhizomagastrodiae_C368-T01_good_1405.670
SRR6049664Rhizomagastrodiae_C368-T10_good_1575.860
SRR6049665Rhizomagastrodiae_C368-T10_good_1575.860
SRP279888GastroGastrodia elata tuber 404.62
JuvenJuvenile tuber353.26
Mother_GastroMother tuber of Gastrodia elata 180.04
Mother_JuvenMother tuber of Juvenile 206.76