Detail information of GWHGAAEX007579/evm.TU.scaffold_20.57


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|476001817|gb|AGI62050.1|2.32E-117SQUAMOSA promoter-binding-like 2 [Erycina pusilla]
Swissprottr|A3C057|SPL17_ORYSJ1.00E-69Squamosa promoter-binding-like protein 17
trEMBLtr|M9QSA7|M9QSA7_9ASPA9.00E-118SQUAMOSA promoter-binding-like 2 {ECO:0000313|EMBL:AGI62050.1}
TAIRAT2G422001.00E-43squamosa promoter binding protein-like 9

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002631895923221975+
Transcript Sequence

Network for GWHGAAEX007579

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03110.13SBP631362.80E-32
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySBP

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.590
SRR2545915Juvenile tuber44.580
SRP108465SRR5643513five period of Gastrodia elata3.030
SRR5643514five period of Gastrodia elata8.690
SRR5643515five period of Gastrodia elata8.610
SRR5643524five period of Gastrodia elata10.580
SRR5643525five period of Gastrodia elata4.010
SRR5643528five period of Gastrodia elata2.610
SRR5643658five period of Gastrodia elata7.650
SRR5643659five period of Gastrodia elata23.630
SRR5643660five period of Gastrodia elata28.550
SRR5643661five period of Gastrodia elata17.510
SRR5643662five period of Gastrodia elata11.260
SRR5643663five period of Gastrodia elata55.280
SRR5643664five period of Gastrodia elata12.730
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.770
SRR6049655Rhizomagastrodiae_C368-T10_good_11.350
SRR6049656Rhizomagastrodiae_C368-T07_good_13.080
SRR6049657Rhizomagastrodiae_C368-T07_good_13.390
SRR6049658Rhizomagastrodiae_C368-T04_good_12.200
SRR6049659Rhizomagastrodiae_C368-T04_good_11.440
SRR6049660Rhizomagastrodiae_C368-T01_good_12.240
SRR6049661Rhizomagastrodiae_C368-T04_good_11.090
SRR6049662Rhizomagastrodiae_C368-T01_good_12.360
SRR6049663Rhizomagastrodiae_C368-T01_good_11.390
SRR6049664Rhizomagastrodiae_C368-T10_good_10.780
SRR6049665Rhizomagastrodiae_C368-T10_good_10.780
SRP279888GastroGastrodia elata tuber 18.28
JuvenJuvenile tuber17.12
Mother_GastroMother tuber of Gastrodia elata 8.00
Mother_JuvenMother tuber of Juvenile 11.24