Detail information of GWHGAAEX007580/evm.TU.scaffold_20.58


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG19949.00E-62Predicted RNA binding protein, contains G-patch and Zn-finger domains
nrgi|743808862|ref|XP_010928444.1|2.69E-80PREDICTED: G patch domain-containing protein 11 [Elaeis guineensis]
trEMBLtr|R0H1P8|R0H1P8_9BRAS3.00E-71Uncharacterized protein {ECO:0000313|EMBL:EOA23174.1}
TAIRAT3G579109.00E-62D111/G-patch domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002632220903242843-
Transcript Sequence

Network for GWHGAAEX007580

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01585.22G-patch761181.80E-13
PF13821.5DUF41871932451.10E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms33.100
SRR2545915Juvenile tuber24.960
SRP108465SRR5643513five period of Gastrodia elata30.180
SRR5643514five period of Gastrodia elata23.710
SRR5643515five period of Gastrodia elata25.210
SRR5643524five period of Gastrodia elata28.130
SRR5643525five period of Gastrodia elata34.890
SRR5643528five period of Gastrodia elata26.350
SRR5643658five period of Gastrodia elata37.750
SRR5643659five period of Gastrodia elata35.090
SRR5643660five period of Gastrodia elata39.980
SRR5643661five period of Gastrodia elata35.370
SRR5643662five period of Gastrodia elata38.370
SRR5643663five period of Gastrodia elata37.870
SRR5643664five period of Gastrodia elata41.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.610
SRR6049655Rhizomagastrodiae_C368-T10_good_120.730
SRR6049656Rhizomagastrodiae_C368-T07_good_127.410
SRR6049657Rhizomagastrodiae_C368-T07_good_135.010
SRR6049658Rhizomagastrodiae_C368-T04_good_129.350
SRR6049659Rhizomagastrodiae_C368-T04_good_134.520
SRR6049660Rhizomagastrodiae_C368-T01_good_128.980
SRR6049661Rhizomagastrodiae_C368-T04_good_126.720
SRR6049662Rhizomagastrodiae_C368-T01_good_120.210
SRR6049663Rhizomagastrodiae_C368-T01_good_122.810
SRR6049664Rhizomagastrodiae_C368-T10_good_124.450
SRR6049665Rhizomagastrodiae_C368-T10_good_124.450
SRP279888GastroGastrodia elata tuber 31.79
JuvenJuvenile tuber48.99
Mother_GastroMother tuber of Gastrodia elata 48.51
Mother_JuvenMother tuber of Juvenile 61.18