Detail information of GWHGAAEX007582/evm.TU.scaffold_20.63


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG05260Nucleosome-binding factor SPN, POB3 subunit
nrgi|743798987|ref|XP_010925368.1|0PREDICTED: FACT complex subunit SSRP1-like [Elaeis guineensis]
Swissprottr|O04235|SSRP1_VICFA0FACT complex subunit SSRP1
trEMBLtr|V4UX31|V4UX31_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR44329.1}
TAIRAT3G287300high mobility group

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002634755853507990-
Transcript Sequence

Network for GWHGAAEX007582

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17292.1POB3_N7982.30E-23
PF03531.13SSrecog1061742.70E-23
PF08512.11Rtt1063504411.20E-23
PF00505.18HMG_box5586261.70E-21
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677Molecular FunctionDNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms131.770
SRR2545915Juvenile tuber167.590
SRP108465SRR5643513five period of Gastrodia elata80.480
SRR5643514five period of Gastrodia elata74.910
SRR5643515five period of Gastrodia elata73.930
SRR5643524five period of Gastrodia elata71.730
SRR5643525five period of Gastrodia elata59.000
SRR5643528five period of Gastrodia elata51.630
SRR5643658five period of Gastrodia elata54.170
SRR5643659five period of Gastrodia elata111.700
SRR5643660five period of Gastrodia elata118.030
SRR5643661five period of Gastrodia elata115.480
SRR5643662five period of Gastrodia elata134.610
SRR5643663five period of Gastrodia elata126.610
SRR5643664five period of Gastrodia elata139.470
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1119.850
SRR6049655Rhizomagastrodiae_C368-T10_good_174.850
SRR6049656Rhizomagastrodiae_C368-T07_good_1106.530
SRR6049657Rhizomagastrodiae_C368-T07_good_1132.360
SRR6049658Rhizomagastrodiae_C368-T04_good_1155.080
SRR6049659Rhizomagastrodiae_C368-T04_good_1181.260
SRR6049660Rhizomagastrodiae_C368-T01_good_1141.300
SRR6049661Rhizomagastrodiae_C368-T04_good_1142.840
SRR6049662Rhizomagastrodiae_C368-T01_good_192.330
SRR6049663Rhizomagastrodiae_C368-T01_good_1118.050
SRR6049664Rhizomagastrodiae_C368-T10_good_180.370
SRR6049665Rhizomagastrodiae_C368-T10_good_180.370
SRP279888GastroGastrodia elata tuber 137.19
JuvenJuvenile tuber130.00
Mother_GastroMother tuber of Gastrodia elata 55.04
Mother_JuvenMother tuber of Juvenile 77.92