Detail information of GWHGAAEX007586/evm.TU.scaffold_20.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0965 | 2.00E-140 | Predicted RNA-binding protein, contains SWAP and G-patch domains |
| nr | gi|743810267|ref|XP_010928850.1| | 0 | PREDICTED: SURP and G-patch domain-containing protein 1-like protein [Elaeis guineensis] |
| Swissprot | tr|Q94C11|SUGP1_ARATH | 1.00E-153 | SURP and G-patch domain-containing protein 1-like protein |
| trEMBL | tr|A0A061DVM4|A0A061DVM4_THECC | 7.00E-177 | SWAP/surp domain-containing protein / D111/G-patch domain-containing protein isoform 1 {ECO:0000313|EMBL:EOX96735.1} |
| TAIR | AT3G52120 | 2.00E-140 | SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 3869512 | 3885004 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007586
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01805.19 | Surp | 148 | 191 | 6.60E-11 |
| PF01585.22 | G-patch | 354 | 398 | 2.30E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006396 | Biological Process | RNA processing |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.480 |
| SRR2545915 | Juvenile tuber | 52.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 45.530 |
| SRR5643514 | five period of Gastrodia elata | 47.070 | |
| SRR5643515 | five period of Gastrodia elata | 41.660 | |
| SRR5643524 | five period of Gastrodia elata | 49.160 | |
| SRR5643525 | five period of Gastrodia elata | 41.570 | |
| SRR5643528 | five period of Gastrodia elata | 49.690 | |
| SRR5643658 | five period of Gastrodia elata | 45.630 | |
| SRR5643659 | five period of Gastrodia elata | 36.020 | |
| SRR5643660 | five period of Gastrodia elata | 34.800 | |
| SRR5643661 | five period of Gastrodia elata | 34.220 | |
| SRR5643662 | five period of Gastrodia elata | 30.280 | |
| SRR5643663 | five period of Gastrodia elata | 34.950 | |
| SRR5643664 | five period of Gastrodia elata | 32.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.740 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 38.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 45.770 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 43.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 39.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 39.090 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.770 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.97 |
| Juven | Juvenile tuber | 40.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 55.08 | |
| Mother_Juven | Mother tuber of Juvenile | 43.08 |