Gene detail

Detail information of GWHGAAEX007589/evm.TU.scaffold_20.77

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434403183\|ref\|YP_007146068.1\|	2.00E-35	chitinase [Cylindrospermum stagnale PCC 7417]
KOG	KOG2806	1.00E-80	Chitinase
nr	gi\|695044110\|ref\|XP_009409787.1\|	3.36E-119	PREDICTED: acidic mammalian chitinase-like isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|W1PL78\|W1PL78_AMBTC	3.00E-119	Uncharacterized protein {ECO:0000313\|EMBL:ERN08436.1}
TAIR	AT4G19810	1.00E-80	Glycosyl hydrolase family protein with chitinase insertion domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	4190339	4192507	-

Transcript Sequence
>GWHTAAEX007589 ATCCAACCATTACTTATTTGAAGGAAGCAGGTAAAGAGGGGGAGTGGGAAGCCGAAGCAGAGGCAAGGCAGGGGAAAACATGATTCGAATCGGGTGGCTGTGGCTTCTGCTCGGATTGCCGCTGTTTGGGAGCAGCCATCCATCAGCAGAGAAAATCCAGGCAGGGTACTATCCCTCATTTTCATCCTCAAGCCTCCCGCCATCGTCCATCCGCTACCAGTACTACACCCACATCTTCTACGCCTTCGTGCAGCCCATACCCGGAAAGCACGCGCTCAACATCACCCCGTCGGACGCCGCCCTCCTCGAATCCTTGGCGGAGGCCGCCAGCCGCCGGAATCCTCCTGTCAGTGTCATCCTCTCGATCGGCGGAGGCGGCAGCAACAGCTCCGCGTTCGCGGACATGGCCTCTCGCCCCTCCTCCCGGTCCGCCTTCATCCGTTCGTCCATCGTCGCGGCGCGCGAATTCGGTCTCCACGGGATGGACCTGGACTGGGAGTTCCCGGCCACGGAACAGGAGATGCGGGACCTGGGGGCGCTGTTCTTGGAGTGGCGGGCGGCGATCGAGGCCGAGGCGGCGGCGTTGGGGAAGCCGGCGCTGCTGCTGACCGCGGCGGTGTACTTCTCCCCGCACCTCTCTATGGGAAACGACACGCGGAGGTCGTACCCGGTGAAAGCGCTGGCGGGATCGGCGGACTGGGTGGCACCCATGTGCTTCGACTTGCACGGGGCGGGGTGGGAGCCGACGAAGACGGGCGCGCACGCGGCGCTGCGCGACAGCGGCGGAGGGGAACTCAGCGGGAGCTTCGGCGTCGGAGCTTGGCTGGGAGCCGGGATGCCGGAGAAGAAGCTGGTGTTGGGGATGCCACTGTATGGGCGCACGTGGACGCTGAGGAGGGTCGAGGAGAACGGGATCGGCGCGCCGGCGGATGGGCCGGGGCCCGGGGAAGAAGGGGTCCTGTCTTATGCGAATATAACGATCCAGTTCGGACCTGGTGCGGATAACGGGACCGTCACCACGCTCTACGATGAGCTCACCGTGGCAGCCTATTCCTTTAAGGGAAAAGCGTGGGTTGGCTACGACGATCTCCTCTCCGTCTCTGCAAAGGTGAAGTTCGCCAGAATGCTGGGCTTGCGCGGCTCCTTCTTTTGGGCTTTGGGCCTCGATGATGCAGACTGGTCCATGTCTCGCCAAGCTTGGTACGCATGGCGGGAAAAGACTCTCTAAAGATGAAGCCACGGCAATGGAGAAATGTGTTACTGTAGCTGAAGCTCATTTCATTGGCTTGTAATTCTAATTATACATAATCAACATTTTATTAAGACTGCTGCGCATAATACAATATGTTTTATAAAGGGTGCTTTAGTACGTTTCGATGTTTTCTTCTTAAGCTTTATCGTAATGAAAGATGAACAGCTGATCCTTCATGGATTTCGATGTTTTCTTGTTAAGCTTTATTGTGATGATTGAAAATGAACAACTGATCCTTCATGGAGAACCTTAGCTCTACTTTAACTGTTGGTGATTGATAATGGGGCACCTTCTTTGCGGCTAGAATCAGCTCCATACCTTCAATGTGTTGCATGATATTGAATCTTCTAATTCCCTTCCCTTCAGCCGGTCCCGTTCCCCCAGAGAGTCTATAATGGGGCACCTTCTTTTCTTGTGAAGCTCAATTTGGGCGTGTCTGATTTACTCGTTTCCTAGATATACTAGCACAAAATTGAATCGAAACTTCATGTCAAATACCGATAATCTCAGTTTGCTCGAATAAATTTTACTTTGCACATACACAAATCAAATACATATCTATTGAGAACAAAGAAAATCACTATAAAATATTAAAGATTAGAAGCCTGAAAGAGAAAACCAAAGTGATGATTTAATAGAAAGAATGAGTCCCTTCAAACTCTAATGAAGTGCTGCCATTTGCCGAGCTGCACGCACTTTGAAAATGTCAAGATGTAATATTAATATATGTTAATTTATGTATGACTAAGTATTATTTAGGTGCCGTATATGATTAAGTCAATGTAAGCTATATTTTGTATAT

Network for GWHGAAEX007589

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.27	Glyco_hydro_18	28	363	1.80E-62

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18
Carbohydrate-Active enzymes Family	GH18

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0008061	Molecular Function	chitin binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.980
SRP064423	SRR2545915	Juvenile tuber	3.390
SRP108465	SRR5643513	five period of Gastrodia elata	111.810
	SRR5643514	five period of Gastrodia elata	105.580
	SRR5643515	five period of Gastrodia elata	94.990
	SRR5643524	five period of Gastrodia elata	103.560
	SRR5643525	five period of Gastrodia elata	1.470
	SRR5643528	five period of Gastrodia elata	0.150
	SRR5643658	five period of Gastrodia elata	0.520
	SRR5643659	five period of Gastrodia elata	1.600
	SRR5643660	five period of Gastrodia elata	2.420
	SRR5643661	five period of Gastrodia elata	2.600
	SRR5643662	five period of Gastrodia elata	2.240
	SRR5643663	five period of Gastrodia elata	1.750
	SRR5643664	five period of Gastrodia elata	3.730
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	140.100
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	210.750
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	246.100
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	99.310
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	94.750
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.820
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	65.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	167.250
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	131.620
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	448.580
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	448.580
SRP279888	Gastro	Gastrodia elata tuber	2.69
	Juven	Juvenile tuber	14.42
	Mother_Gastro	Mother tuber of Gastrodia elata	191.96
	Mother_Juven	Mother tuber of Juvenile	162.00