Gene detail

Detail information of GWHGAAEX007594/evm.TU.scaffold_20.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|557694830\|ref\|YP_008797884.1\|	4.00E-14	conserved hypothetical protein [Candidatus Caldiarchaeum subterraneum]
KOG	KOG0979	0	Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily
nr	gi\|743786526\|ref\|XP_010922195.1\|	0	PREDICTED: structural maintenance of chromosomes protein 5 [Elaeis guineensis]
Swissprot	tr\|Q9LFS8\|SMC5_ARATH	0	Structural maintenance of chromosomes protein 5
trEMBL	tr\|A0A067LH91\|A0A067LH91_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP43579.1}
TAIR	AT5G15920	0	structural maintenance of chromosomes 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	4561144	4637025	-

Transcript Sequence
>GWHTAAEX007594 GAAAGCAAAAAACTTGCCACCCCTAAAACCGTTATTCGAAGGTCGGTCCGTCTTCATATCTGTCTATTCGTGTCCGTTCCCAACTTGCCCCCATCCCCTAACATGTACCTGGTAAAACCGACCTTCGGTTCAATGATTCCTAAACTCTACGGCTAGTTTTAAGTGTATAGTCTCTTCCTCCTAAACCTAAGCCCTAGTTAAAGGCGGGAGAAACAGATCCCGTCTCTACCTTTCATTCATCTTCGCTTTTCTCCTTCACTGCCATGGAGAAGCGCTCTGCGAAGCGACTCAAGCTTTCTTCTCAACCGTGCGATCGGAGAGGTGAAGACGATTTTTTGCCTGGCAACATAACGGAGATCGTAATACACAACTTTATGACCTATGATCACCTTGTATGCAAGCCTGGATCCCGCCTCAATCTTGTTATTGGACCCAACGGATCAGGGAAGAGCTCACTTGTGTGCGCCGTTGCTTTAGGTCTCGCTGGAGAGCCTCAGCTTCTTGGAAGGGCTTCGAGCATTGGAGCTTTTGTGAAACGAGGGGAGGAGTTTGGCTATGTGAAAATTGCTTTGAAGGCCTTAAATTTGGAGGAAAATATTACAATTATGAGGAAGATTGATATTAATAACAAGTCTGAATGGGTTCTCAATGGTGCTACAGTTCCAAAAAAAAATGTTATCGAGGTTATTCAAAAGTTTAATATTCAAGTCAATAATTTAACTCAATTCTTACCTCAAGATCGAGTATGTGAATTTGCTAAGTTAACTCCTGTGCAACTTCTACAAGAAACTGAGAAAGCTGTTGGTAATCCTCAATTACCAGTTCAACATCAAACACTTATTGAGAAAAGGAGAGAGTTGAAGGACCTTGAAGTGAGTGTTGCTAGAAATAAGGACACTTTGAATCAGCTCAAAGTTCTTAATGCATTGCAAGAAAAGGATGTGAAGCGGGTTCGTCAAAGAGAAAAAATTTTGTTGAAGGTGGAAAACTTGAAAAAAAAATTGCCTTGGCTTAAATATGATATGAATAAGGCGGTCTACAAAAATGCACAAAATCAAGAGGCTGAAGCAAAGAAGAAACTCGACGAAGCTGCTAAAGTGATGAATGAATTTAAAATGCCCATTGAGAAACAAAAGATGGAAAAAGCAGCACAAGAATCTGCTTTAAAGATAATTAATGAAAAAATAATTAGGAATGCAAAGAAAAGGATGGACTTAATTGAGACGGAAAACAGAATGGCGGCTCAAGTGCGAGCCAAATATGAAGAAGTAGAAGATATAAAAAGGCAAGAAATATCCCAACAGCATAGCATCATGAAAGCCAAGGAAGATTTGGCAGCTGCCCAAAGAGAGCTTACTGATCTGCCAGCATACAATCCTCCAAAAGAAGAGCTAGAAAAGCTAGGTTATCAAATATTGGAGCTAGAAATGAATGCAAACCAAATTAAATTGCAACGGACAGAGAAGGGAAACGCCCTTAATCAGAGGAAAATGTCATTGAAAAAATGCGTGGACAGGCTGAAGGAATTGGACAATGAAAGCACCAAACTTCTTCAAGCATTGAAAAACTCTGGTGCAGATAAAATATTTGAAGCCTATAAGTGGCTTCAAGAAAACCGGCATGACTTGAAGAATGAAGTATATGGCCCAGTTCTTTTGGAGGTTAAAGTTCCAATTGGGGTTCATGCCACCTACTTGGAGAATCATGTGCCTAATTATATCTGGAAGTCCTTTGTTACACAGGATTCCTCAGACAGAGACCTCTTGGTTCATAACTTGAAGCAGTATGATGTTCCTATTCTAAATTATGTTGGAGAAAAGGGCATAAACAGGTCACAGTTTGAATTGACTCAGGAGATGCGGGATCTTGCCATTTCTTCTCGTCTTGATCAAGTTTTCAGTGCTCCTCTTGCTGTAAAGGATGTCCTGATTAGCCAAGCTGCATTAGACCGTTCGTATATTGGTGATCGTGAAACTGATAAGAGAGCTGATGAAGTATCAAAACTAGGAATATCTGATCTTTGGACTCCAGAAAGTCATTATCGATGGTCGATTTCCAGATATGGTGGACATGTTTCAGCTATTGTGGAGCCAGTGCACTCTTCTCGCCTTTTTATGCAGAGTGTGGATGCTGATGACATGGAAAATCTCAAGTTTCGAAAATCTGAAATTGAAGCCGACATTACTAGAATTGAGGAAAGCCTTAAAGTTTTTCAAGCTGAACAGAGACAACTGGAAGATGAAGCTGCTAAGCTACATCGACAACGGGAGGATGTTATTGATACTGTAAATCTTGAGAAAAGAAAGCGTCGTGAAATGGAAACTCGCGTTGATCAAAGGAGAAGAAAATTGGAGTCTTTAAGTAAAGAGGAGGATGCAAAATTGAATGTTAAGAAGCTTGTTGATCAGGCTTTCCAACTAGATGAAAAACGATTTGAATTAGCTAATGAAATCAAGAAATATCTAGTTGAAACCATCCCTTTAAGATTGAACTTAGCGGTGAAACAAATGACTTGCATTGAAATCGATGCTAAGATAAGGGAAATGGAAGGTGATGTCAAGAAACATGAGAAGTTTGCTATTCATGCAGCTCAATGCCTTGAAGTTTGTAAGGAAGAAACTGAAAGATGTAGAAAGGATCTTCTAGCTGCAAAGAATATTGCAGAATCAATAGCCATCATCACTCCTGAACTTGCAAAGGAGTTCCACGATATGCCAGCTATTGTGGAGGATTTGGAAGCTGCAATCCAAGATGGTTATTCTGAAGCAAATTCAATATTGTTCCTTAACCAAAACATTATTCAAGAGTTTGAAAGTCGTCAACAAAAGATACATAGCATTGCAGTAAAACTCGAGGTAGATGAAGGGGCACTAAGGAGTTGTGTTTCTGAAATCAGTGCCGTAAGGGATATGTGGCTGCCAACACTGAGAAGCCTTGTTGGGAAGATTAATGAAACTTTCAGTCACAATTTCCAAGAAATGGCAGTTGCTGGCGAAGTTTGTTTGGATGAACACGATATGGATTATGATAAGTATGGTATACTTATAAAGGTCAAGTTCAGGCAGACAGGACAGCTCCAGGTTTTGAGTGCGCATCATCAATCCGGAGGGGAACGCTCAGTTTCAACCATTCTTTATCTTGTTTCTCTTCAAGATATCACAAACTGTCCTTTCCGTGTTGTTGATGAAATCAATCAAGGAATGGACCCAATTAATGAAAGAAAAATGTTTCAGCAACTTGTGAGGGCTGCTAGCCAACAAAATACACCCCAGTGCTTCCTGTTGACACCAAAACTGCTTCCTGATTTAGAGTACAGTGATGCCTGCAGCATTCTGAACATCATGAATGGCCCTTGGATTGAGAAGCCATCTCAAGTTTGGAATGAGGGCGAATGCTGGAGAAAGGTAATGGGTCTGGCAAATGGTGCCGAACATTGATATCTTGTAAGTTGATTAAATGATGGCCATAATAATAAATATTATAGGATGTAAAATTCTAAATGCATATCAATTTTTTTTTTTTGCTAATTTGTATTTATACCTATTGATCTTATCATGCAAAGTAAAGTCTTTTTTTATTGTAAAACTAGATATTTGATCTTGTTAGATATATTAGCAATGTGATTGTTTTTATATCAAGC

Network for GWHGAAEX007594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02463.18	SMC_N	29	999	1.90E-23

Protein Sequence

>GWHPAAEX007594
MEKRSAKRLKLSSQPCDRRGEDDFLPGNITEIVIHNFMTYDHLVCKPGSRLNLVIGPNGSGKSSLVCAVALGLAGEPQLLGRASSIGAFVKRGEEFGYVKIALKALNLEENITIMRKIDINNKSEWVLNGATVPKKNVIEVIQKFNIQVNNLTQFLPQDRVCEFAKLTPVQLLQETEKAVGNPQLPVQHQTLIEKRRELKDLEVSVARNKDTLNQLKVLNALQEKDVKRVRQREKILLKVENLKKKLPWLKYDMNKAVYKNAQNQEAEAKKKLDEAAKVMNEFKMPIEKQKMEKAAQESALKIINEKIIRNAKKRMDLIETENRMAAQVRAKYEEVEDIKRQEISQQHSIMKAKEDLAAAQRELTDLPAYNPPKEELEKLGYQILELEMNANQIKLQRTEKGNALNQRKMSLKKCVDRLKELDNESTKLLQALKNSGADKIFEAYKWLQENRHDLKNEVYGPVLLEVKVPIGVHATYLENHVPNYIWKSFVTQDSSDRDLLVHNLKQYDVPILNYVGEKGINRSQFELTQEMRDLAISSRLDQVFSAPLAVKDVLISQAALDRSYIGDRETDKRADEVSKLGISDLWTPESHYRWSISRYGGHVSAIVEPVHSSRLFMQSVDADDMENLKFRKSEIEADITRIEESLKVFQAEQRQLEDEAAKLHRQREDVIDTVNLEKRKRREMETRVDQRRRKLESLSKEEDAKLNVKKLVDQAFQLDEKRFELANEIKKYLVETIPLRLNLAVKQMTCIEIDAKIREMEGDVKKHEKFAIHAAQCLEVCKEETERCRKDLLAAKNIAESIAIITPELAKEFHDMPAIVEDLEAAIQDGYSEANSILFLNQNIIQEFESRQQKIHSIAVKLEVDEGALRSCVSEISAVRDMWLPTLRSLVGKINETFSHNFQEMAVAGEVCLDEHDMDYDKYGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDITNCPFRVVDEINQGMDPINERKMFQQLVRAASQQNTPQCFLLTPKLLPDLEYSDACSILNIMNGPWIEKPSQVWNEGECWRKVMGLANGAEH

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.080
SRP064423	SRR2545915	Juvenile tuber	10.470
SRP108465	SRR5643513	five period of Gastrodia elata	8.690
	SRR5643514	five period of Gastrodia elata	8.330
	SRR5643515	five period of Gastrodia elata	6.460
	SRR5643524	five period of Gastrodia elata	7.250
	SRR5643525	five period of Gastrodia elata	14.210
	SRR5643528	five period of Gastrodia elata	9.370
	SRR5643658	five period of Gastrodia elata	15.250
	SRR5643659	five period of Gastrodia elata	13.560
	SRR5643660	five period of Gastrodia elata	11.240
	SRR5643661	five period of Gastrodia elata	11.460
	SRR5643662	five period of Gastrodia elata	9.010
	SRR5643663	five period of Gastrodia elata	9.810
	SRR5643664	five period of Gastrodia elata	10.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.500
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.840
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.210
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.340
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	8.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	8.710
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	7.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.190
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.560
SRP279888	Gastro	Gastrodia elata tuber	14.93
	Juven	Juvenile tuber	16.45
	Mother_Gastro	Mother tuber of Gastrodia elata	10.58
	Mother_Juven	Mother tuber of Juvenile	13.90