Detail information of GWHGAAEX007596/evm.TU.scaffold_20.84
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1707 | 0 | Predicted Ras related/Rac-GTP binding protein |
| nr | gi|672126916|ref|XP_008786915.1| | 0 | PREDICTED: mitochondrial Rho GTPase 1-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q6Z7L8|RAC7_ORYSJ | 1.00E-16 | Rac-like GTP-binding protein 7 (Precursor) |
| trEMBL | tr|M0U5C5|M0U5C5_MUSAM | 0 | Mitochondrial Rho GTPase {ECO:0000256|PIRNR:PIRNR037488} |
| TAIR | AT5G27540 | 0 | MIRO-related GTP-ase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 4758397 | 4804542 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007596
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 17 | 177 | 9.30E-17 |
| PF08356.11 | EF_assoc_2 | 230 | 315 | 4.80E-34 |
| PF08355.11 | EF_assoc_1 | 352 | 420 | 2.50E-18 |
| PF00071.21 | Ras | 429 | 566 | 0.00011 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07870 | RHOT1, ARHT1 | Mitophagy - animal | map04137 |
| Apoptosis - fly | map04214 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007005 | Biological Process | mitochondrion organization |
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
| GO:0005509 | Molecular Function | calcium ion binding |
| GO:0031307 | Cellular Component | integral component of mitochondrial outer membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.330 |
| SRR2545915 | Juvenile tuber | 75.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 66.410 |
| SRR5643514 | five period of Gastrodia elata | 71.580 | |
| SRR5643515 | five period of Gastrodia elata | 62.420 | |
| SRR5643524 | five period of Gastrodia elata | 69.460 | |
| SRR5643525 | five period of Gastrodia elata | 57.960 | |
| SRR5643528 | five period of Gastrodia elata | 54.250 | |
| SRR5643658 | five period of Gastrodia elata | 57.910 | |
| SRR5643659 | five period of Gastrodia elata | 67.370 | |
| SRR5643660 | five period of Gastrodia elata | 83.070 | |
| SRR5643661 | five period of Gastrodia elata | 80.530 | |
| SRR5643662 | five period of Gastrodia elata | 85.270 | |
| SRR5643663 | five period of Gastrodia elata | 79.950 | |
| SRR5643664 | five period of Gastrodia elata | 88.870 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 86.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 121.080 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 84.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 93.490 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 90.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 111.160 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 90.030 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 97.180 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 87.280 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 93.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 88.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 88.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 79.37 |
| Juven | Juvenile tuber | 85.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 63.19 | |
| Mother_Juven | Mother tuber of Juvenile | 84.59 |