Detail information of GWHGAAEX007605/evm.TU.scaffold_20.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG47272.00E-75U1-like Zn-finger protein
nrgi|731326728|ref|XP_010674166.1|3.43E-100PREDICTED: zinc finger matrin-type protein 2 [Beta vulgaris subsp. vulgaris]
trEMBLtr|A0A061F406|A0A061F406_THECC1.00E-100C2H2 and C2HC zinc fingers superfamily protein isoform 1 {ECO:0000313|EMBL:EOY11628.1}
TAIRAT3G057602.00E-75C2H2 and C2HC zinc fingers superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002654801955493052-
Transcript Sequence

Network for GWHGAAEX007605

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12171.7zf-C2H2_jaz851101.50E-06
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
K12848SNU23 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.220
SRR2545915Juvenile tuber32.430
SRP108465SRR5643513five period of Gastrodia elata31.580
SRR5643514five period of Gastrodia elata27.350
SRR5643515five period of Gastrodia elata26.720
SRR5643524five period of Gastrodia elata31.910
SRR5643525five period of Gastrodia elata22.980
SRR5643528five period of Gastrodia elata20.840
SRR5643658five period of Gastrodia elata18.730
SRR5643659five period of Gastrodia elata27.870
SRR5643660five period of Gastrodia elata30.330
SRR5643661five period of Gastrodia elata33.910
SRR5643662five period of Gastrodia elata29.560
SRR5643663five period of Gastrodia elata27.170
SRR5643664five period of Gastrodia elata25.520
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_127.760
SRR6049655Rhizomagastrodiae_C368-T10_good_121.460
SRR6049656Rhizomagastrodiae_C368-T07_good_128.980
SRR6049657Rhizomagastrodiae_C368-T07_good_131.320
SRR6049658Rhizomagastrodiae_C368-T04_good_130.720
SRR6049659Rhizomagastrodiae_C368-T04_good_130.150
SRR6049660Rhizomagastrodiae_C368-T01_good_128.290
SRR6049661Rhizomagastrodiae_C368-T04_good_130.120
SRR6049662Rhizomagastrodiae_C368-T01_good_133.310
SRR6049663Rhizomagastrodiae_C368-T01_good_130.130
SRR6049664Rhizomagastrodiae_C368-T10_good_135.360
SRR6049665Rhizomagastrodiae_C368-T10_good_135.360
SRP279888GastroGastrodia elata tuber 39.91
JuvenJuvenile tuber60.71
Mother_GastroMother tuber of Gastrodia elata 48.68
Mother_JuvenMother tuber of Juvenile 59.56