Detail information of GWHGAAEX007608/evm.TU.scaffold_20.106
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256371905|ref|YP_003109729.1| | 6.00E-23 | nucleotidyl transferase [Acidimicrobium ferrooxidans DSM 10331] |
| KOG | KOG1462 | 2.00E-52 | Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) |
| nr | gi|672177002|ref|XP_008808583.1| | 0 | PREDICTED: translation initiation factor eIF-2B subunit gamma [Phoenix dactylifera] |
| Swissprot | tr|Q9M2S0|GMPP2_ARATH | 7.00E-06 | Probable mannose-1-phosphate guanylyltransferase 2 |
| trEMBL | tr|M0S4J7|M0S4J7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P02560_001} |
| TAIR | HS9966779 | 2.00E-52 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 5838539 | 5875767 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007608
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00483.22 | NTP_transferase | 6 | 150 | 5.40E-15 |
| PF00132.23 | Hexapep | 363 | 398 | 0.0013 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03241 | EIF2B3 | RNA transport | map03013 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016779 | Molecular Function | nucleotidyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.520 |
| SRR2545915 | Juvenile tuber | 33.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 27.340 |
| SRR5643514 | five period of Gastrodia elata | 31.230 | |
| SRR5643515 | five period of Gastrodia elata | 27.670 | |
| SRR5643524 | five period of Gastrodia elata | 27.520 | |
| SRR5643525 | five period of Gastrodia elata | 34.300 | |
| SRR5643528 | five period of Gastrodia elata | 21.240 | |
| SRR5643658 | five period of Gastrodia elata | 26.860 | |
| SRR5643659 | five period of Gastrodia elata | 32.360 | |
| SRR5643660 | five period of Gastrodia elata | 35.900 | |
| SRR5643661 | five period of Gastrodia elata | 28.000 | |
| SRR5643662 | five period of Gastrodia elata | 27.810 | |
| SRR5643663 | five period of Gastrodia elata | 32.080 | |
| SRR5643664 | five period of Gastrodia elata | 29.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 40.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 41.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 39.220 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.510 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 40.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 41.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 35.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 35.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 55.80 |
| Juven | Juvenile tuber | 41.59 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.02 | |
| Mother_Juven | Mother tuber of Juvenile | 36.46 |