Detail information of GWHGAAEX007612/evm.TU.scaffold_20.113
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0812 | 6.00E-131 | SNARE protein SED5/Syntaxin 5 |
| nr | gi|743798738|ref|XP_010925313.1| | 4.30E-175 | PREDICTED: syntaxin-32-like [Elaeis guineensis] |
| Swissprot | tr|Q9LK09|SYP32_ARATH | 2.00E-137 | Syntaxin-32 |
| trEMBL | tr|M0RM55|M0RM55_MUSAM | 3.00E-166 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P28310_001} |
| TAIR | AT3G24350 | 6.00E-131 | syntaxin of plants 32 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 6028746 | 6035335 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007612
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF11416.7 | Syntaxin-5_N | 8 | 26 | 0.00021 |
| PF05739.18 | SNARE | 287 | 338 | 1.80E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08490 | STX5 | SNARE interactions in vesicular transport | map04130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006886 | Biological Process | intracellular protein transport |
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0005484 | Molecular Function | SNAP receptor activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.240 |
| SRR2545915 | Juvenile tuber | 17.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.670 |
| SRR5643514 | five period of Gastrodia elata | 19.150 | |
| SRR5643515 | five period of Gastrodia elata | 25.840 | |
| SRR5643524 | five period of Gastrodia elata | 18.780 | |
| SRR5643525 | five period of Gastrodia elata | 30.670 | |
| SRR5643528 | five period of Gastrodia elata | 27.090 | |
| SRR5643658 | five period of Gastrodia elata | 31.330 | |
| SRR5643659 | five period of Gastrodia elata | 19.110 | |
| SRR5643660 | five period of Gastrodia elata | 17.720 | |
| SRR5643661 | five period of Gastrodia elata | 18.840 | |
| SRR5643662 | five period of Gastrodia elata | 22.860 | |
| SRR5643663 | five period of Gastrodia elata | 17.990 | |
| SRR5643664 | five period of Gastrodia elata | 17.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.200 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.810 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 15.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.720 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.670 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 18.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 22.92 |
| Juven | Juvenile tuber | 14.97 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 30.19 | |
| Mother_Juven | Mother tuber of Juvenile | 29.63 |