Detail information of GWHGAAEX007616/evm.TU.scaffold_20.119


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|186683200|ref|YP_001866396.1|2.00E-37signal transduction protein [Nostoc punctiforme PCC 73102]
KOGKOG00274.00E-102Calmodulin and related proteins (EF-Hand superfamily)
nrgi|413945839|gb|AFW78488.1|3.20E-101calmodulin1 [Zea mays]
Swissprottr|P17928|CALM_MEDSA3.00E-103Calmodulin
trEMBLtr|Q6LEC4|Q6LEC4_VIGRA2.00E-101Calmodulin {ECO:0000313|EMBL:AAA34238.1}
TAIRAT3G438104.00E-102calmodulin 7

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002662744516276709-
Transcript Sequence

Network for GWHGAAEX007616

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13499.5EF-hand_712732.10E-15
PF13499.5EF-hand_7831463.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02183CALM Ras signaling pathway map04014
Rap1 signaling pathwaymap04015
MAPK signaling pathway - plantmap04016
Apelin signaling pathwaymap04371
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
cAMP signaling pathwaymap04024
cGMP-PKG signaling pathwaymap04022
Oocyte meiosismap04114
Cellular senescencemap04218
C-type lectin receptor signaling pathwaymap04625
Insulin signaling pathwaymap04910
Glucagon signaling pathwaymap04922
GnRH signaling pathwaymap04912
Estrogen signaling pathwaymap04915
Oxytocin signaling pathwaymap04921
Melanogenesismap04916
Renin secretionmap04924
Aldosterone synthesis and secretionmap04925
Adrenergic signaling in cardiomyocytesmap04261
Vascular smooth muscle contractionmap04270
Salivary secretionmap04970
Gastric acid secretionmap04971
Dopaminergic synapsemap04728
Long-term potentiationmap04720
Neurotrophin signaling pathwaymap04722
Phototransductionmap04744
Phototransduction - flymap04745
Olfactory transductionmap04740
Inflammatory mediator regulation of TRP channelsmap04750
Circadian entrainmentmap04713
Plant-pathogen interactionmap04626

Gene Ontology

GO term OntologyName
GO:0005509Molecular Functioncalcium ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms1057.040
SRR2545915Juvenile tuber1208.340
SRP108465SRR5643513five period of Gastrodia elata533.700
SRR5643514five period of Gastrodia elata359.880
SRR5643515five period of Gastrodia elata420.930
SRR5643524five period of Gastrodia elata368.990
SRR5643525five period of Gastrodia elata476.250
SRR5643528five period of Gastrodia elata409.830
SRR5643658five period of Gastrodia elata376.090
SRR5643659five period of Gastrodia elata827.250
SRR5643660five period of Gastrodia elata999.280
SRR5643661five period of Gastrodia elata973.660
SRR5643662five period of Gastrodia elata987.840
SRR5643663five period of Gastrodia elata814.840
SRR5643664five period of Gastrodia elata1133.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1540.440
SRR6049655Rhizomagastrodiae_C368-T10_good_1173.500
SRR6049656Rhizomagastrodiae_C368-T07_good_1508.020
SRR6049657Rhizomagastrodiae_C368-T07_good_1683.920
SRR6049658Rhizomagastrodiae_C368-T04_good_1732.780
SRR6049659Rhizomagastrodiae_C368-T04_good_1780.040
SRR6049660Rhizomagastrodiae_C368-T01_good_1584.900
SRR6049661Rhizomagastrodiae_C368-T04_good_1664.520
SRR6049662Rhizomagastrodiae_C368-T01_good_1392.010
SRR6049663Rhizomagastrodiae_C368-T01_good_1473.950
SRR6049664Rhizomagastrodiae_C368-T10_good_1376.130
SRR6049665Rhizomagastrodiae_C368-T10_good_1376.130
SRP279888GastroGastrodia elata tuber 1,012.33
JuvenJuvenile tuber553.47
Mother_GastroMother tuber of Gastrodia elata 620.68
Mother_JuvenMother tuber of Juvenile 588.67