Gene detail

Detail information of GWHGAAEX007619/evm.TU.scaffold_20.124

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|339325444\|ref\|YP_004685137.1\|	4.00E-137	L-2-hydroxyglutarate oxidase LhgO [Cupriavidus necator N-1]
KOG	KOG2665	0	Predicted FAD-dependent oxidoreductase
nr	gi\|743864915\|ref\|XP_010904697.1\|	0	PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial [Elaeis guineensis]
trEMBL	tr\|G7KP59\|G7KP59_MEDTR	0	FAD-dependent oxidoreductase {ECO:0000313\|EMBL:AES75123.2}
TAIR	AT3G56840	0	FAD-dependent oxidoreductase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	6414092	6439872	-

Transcript Sequence
>GWHTAAEX007619 GCACAACTTATTATCATAAAAGCCATTGGTTTACAGTATTTAAACTCCATTCCGTTTTGTTCGATATTATCTGCTGGAGAGCGGCCCAAGCAATCTGCGCCTTAACCGTACTGGCGTTATCGAAGGTGATCCAAGATCCAATGTTCCGGAAAGCATTCCGCAGGGCGGGAGGCTTTTCAGCGGCGACGGCGAACTATCGCCGGAATTCGATGAGCTCCGACAGCAGAGTGCCTGCGGAGACGGCGGACGCCGTAGTGATCGGCGCCGGCGTCGTCGGGCTTGCCGTAGCGAGAGAGCTTGCGCTGAAAGGGCGAGATGTGCTCGTACTTGAGGCGTCCTCGACCTTCGGCACCCGCACAAGCTCTCGGAACAGTGAAGTTATCCACGCTGGTCTTTACTATCCACCTCAATCCCTCAAGGCAGTTCTGTGTGTCAAAGGAAGGGAATTGCTCTACAAGTACTGCTCTGATAGAGGGATTCCACATAAGCAGCTTGGGAAGCTCATTGTCGCTACTAGTTCTTCTGATATTTCAAAGCTGGATCAAATTGTAAAGCGTGGGATGGAAAATGGGGTCAAGGATTTGAGGATGGTGGATGGATCTTTGGCCTTGGAAATGGAACCAGAACTTCAATGTGTTAAAGCTTTGCTGTCTCCTTCTTCTGGGATCATTGATTCACATTCATTCATGCTCTCCTTGGTGGGGGAAGCTGAAAGCTTCAGAACTACAATATCTTATAATACAGTAGTTATTGGGGGGCAAGTTGTAAATAACTCCATGCAACTCCAAATTTCAGAAAGCAAAGACCTTGAAATTCATGCAGGAGAATCTGCATTTCATCCTCAACTTGTAATCATCCCAAAAATTGTGATCAACTCTGCAGGTTTAAGCGCTATTCATCTTGCAAAGAGATTTCAGGGTCTTAAACAGAGATTCATCCCAGCATCCTATTTTGCTCGTGGCTGTTATTTCACCCTTTGTAATACAAAGTCTCCTTTCAGTCGTTTAATTTATCCAATACCGGAAGATGGTGGCCTTGGAGTGCATGTTAGTTTGGACCTTAATGGCCTGGTCAAATTTGGGCCCAATGTAGAATGGATTGATGACGTGGATGGCATTTCGAGCTTCTTGAATAGGTTTGACTATTCTGTAAATTCTGATCCATCAAGCAGATTTTATCCTGAAATCAGAAAGTATTTTCCTAATTTAAGAGATGGTTCACTAGAACCAGGATATTCAGGAATTAGACCAAAACTTTCAGGACAAGGACAAATTCCTTCTGATTTTGTTATTCAGGGGGAGAACACTCATGGTATTCCTGGGCTGATAAACTTATTTGGAATTGAATCTCCTGGCCTAACATCCAGTTTAGCCATTGCAAATTACACTGTATCAAATTTTGTTAACTAGTGCAGTAGCCTGCATTGAAAATCTAAAGGCTTCTGATGCAGGTTGCATTGACTAAAGCCATTTAAAAACTAAAGCTATTTATAAGGTTATTATTTGAGCGACTTGGAATATTTATTGCGAAGGTGATCCTATTTTTGTTCTCATAAAAATTTTTAAAAATGTGAAAAGCTATTGCTTCAAGAGTACATACACTTTCTTAATTCTGCTAAGGAAGATCTTATTGTGAACTCGTTAACTTGGAATGCTGATGCACAACTGAACAATGGAGATGCTCATTATAATGCTACTCATGCTTTTAAGGAAAATATTGAGGAAGCTCTTTCTTGGGAGAAACAAAGAAGCAAAGCTCATTGATTTGTTTGCTAGAGAAGATGATTTGAGCTCTTTATATAAATATCTTTGATAATATACCTTGGAGGAATCGGAGATAGCAAATAAGACCGTTGCCCATATCTTAACTCTTTTCAACAAGGTGCTTTGGATCTTATTACTCCATATTTCAAAGCAGAAATTCTCCATGTGATTTCAAATTTTATTGCGGATGCGGCTCCGAGAACCAATTGATTGACTATGCTTTCAATCACAGTTGCATGCTTCCAATAATTCGTAAACATTTGCATGCTTCAGCATTAATGATTTCAGTCCCACTCCTTGTGCAAACACGCACAAGCAAGTTTTCCATTATATAATTATGATTTCGAATCAACTTTTGTCCATGATAGAGCTATTTCAGACAATATTATCAGCTTGTTCTGGAAGTGCAGGTCTCCAGTTTGACATCAACAAAGCCTTTTGATTCAGTAGTAAGCAGACATTATATTTTATCCAGATTACGGGAATGCAGTTTCTTTCCCACCTTCATCAAATGGATCAGAGCCTGCATTTTGAAAACATTTTCTTTTCTGTATCAATTAATGGCAAGTTACATGGACATTCTAATGCGGAAAATGATCATAGACAGAGGATTGCGTGCTTTCGTCCTTTCTCTTCTCTTTGGCTCTCACTTCCTCATTTTGATGGTGCCCATAGACAAAAAGAGGGTGTTAGTGCTTGTGGGTATTACTTCTCACTCAATAACTAAATAACTTTCAAAATATTGTTACTTGGCTGGCTGCTTGATTATTTTCAGAATAGCTTTTTTTGTTGTCTGGCTTACGGTCACCTATATTTCTGCATCCTGATTGCTACTGGCTCTACTCTTTCTGCCTTAGAAGAAACATGTTTTTCTTATGGGTTTGCACTGCGTCGGTTAATAGCTTTCGGCTGGCATATTTGTTATCTGGTTGGCTGTTTATGATGGCTGCAATTTTATCCAGATCCGGGACTCGTTTGAGGGCTTCAAGTTCTTGAGTTGAAGCACGCCTCCCCATATCATCCCAAGTCCCCGCTCTATTTCCGGCCTCGTCAGCTGCGGCGTGTGCCTTAGGAGCAGCCGTGCGAGCTTGCGCCGCCGCCGCAGTCCTATGCCGGACCTCAGTGCTGCTTTTCCGGCTTCTGCAATCTGACGGACACTCACTGTTGCTATGGATGATGTATGCACACAAAAGCTCTTGTACGGCCGACGATGCCTCTGGAATATTATATTATTTTTTGAGCTGCTAATGTTGTATTCGTTTCTCAGCTCATTTCTCTTTAAAAAATTCTATGCTAACACACCAAAAAAAATATTAGATCATATAAATTTTTTTATTTTTATTTTTATATATAGTTGTT

Network for GWHGAAEX007619

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01266.23	DAO	36	417	3.20E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00109	L2HGDH	Metabolic pathways	map01100
K00109	L2HGDH	Butanoate metabolism	map00650

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016491	Molecular Function	oxidoreductase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.470
SRP064423	SRR2545915	Juvenile tuber	7.620
SRP108465	SRR5643513	five period of Gastrodia elata	6.300
	SRR5643514	five period of Gastrodia elata	6.010
	SRR5643515	five period of Gastrodia elata	6.640
	SRR5643524	five period of Gastrodia elata	6.190
	SRR5643525	five period of Gastrodia elata	7.270
	SRR5643528	five period of Gastrodia elata	6.030
	SRR5643658	five period of Gastrodia elata	7.710
	SRR5643659	five period of Gastrodia elata	5.680
	SRR5643660	five period of Gastrodia elata	5.810
	SRR5643661	five period of Gastrodia elata	5.530
	SRR5643662	five period of Gastrodia elata	7.310
	SRR5643663	five period of Gastrodia elata	5.860
	SRR5643664	five period of Gastrodia elata	7.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.200
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.580
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.280
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.070
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.070
SRP279888	Gastro	Gastrodia elata tuber	10.19
	Juven	Juvenile tuber	8.36
	Mother_Gastro	Mother tuber of Gastrodia elata	10.79
	Mother_Juven	Mother tuber of Juvenile	14.44