Detail information of GWHGAAEX007624/evm.TU.scaffold_20.128


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|302390582|ref|YP_003826403.1|4.00E-128serine hydroxymethyltransferase [Thermosediminibacter oceani DSM 16646]
KOGKOG24670Glycine/serine hydroxymethyltransferase
nrgi|672180191|ref|XP_008810278.1|0PREDICTED: serine hydroxymethyltransferase, mitochondrial [Phoenix dactylifera]
Swissprottr|P50433|GLYM_SOLTU0Serine hydroxymethyltransferase, mitochondrial (Precursor)
trEMBLtr|M0TL72|M0TL72_MUSAM0Serine hydroxymethyltransferase {ECO:0000256|RuleBase:RU000585}
TAIRAT4G379300serine transhydroxymethyltransferase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002666256666641377+
Transcript Sequence

Network for GWHGAAEX007624

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00464.18SHMT604571.40E-208
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00600glyA, SHMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680
Pyrimidine metabolismmap00240
Cyanoamino acid metabolismmap00460
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0019264Biological Processglycine biosynthetic process from serine
GO:0035999Biological Processtetrahydrofolate interconversion
GO:0030170Molecular Functionpyridoxal phosphate binding
GO:0004372Molecular Functionglycine hydroxymethyltransferase activity
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms90.860
SRR2545915Juvenile tuber52.250
SRP108465SRR5643513five period of Gastrodia elata47.590
SRR5643514five period of Gastrodia elata46.190
SRR5643515five period of Gastrodia elata49.650
SRR5643524five period of Gastrodia elata47.760
SRR5643525five period of Gastrodia elata60.020
SRR5643528five period of Gastrodia elata48.190
SRR5643658five period of Gastrodia elata43.710
SRR5643659five period of Gastrodia elata46.100
SRR5643660five period of Gastrodia elata49.680
SRR5643661five period of Gastrodia elata53.850
SRR5643662five period of Gastrodia elata70.490
SRR5643663five period of Gastrodia elata68.360
SRR5643664five period of Gastrodia elata64.810
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_162.690
SRR6049655Rhizomagastrodiae_C368-T10_good_143.670
SRR6049656Rhizomagastrodiae_C368-T07_good_153.280
SRR6049657Rhizomagastrodiae_C368-T07_good_162.060
SRR6049658Rhizomagastrodiae_C368-T04_good_174.150
SRR6049659Rhizomagastrodiae_C368-T04_good_181.000
SRR6049660Rhizomagastrodiae_C368-T01_good_163.890
SRR6049661Rhizomagastrodiae_C368-T04_good_166.880
SRR6049662Rhizomagastrodiae_C368-T01_good_165.130
SRR6049663Rhizomagastrodiae_C368-T01_good_164.800
SRR6049664Rhizomagastrodiae_C368-T10_good_157.190
SRR6049665Rhizomagastrodiae_C368-T10_good_157.190
SRP279888GastroGastrodia elata tuber 56.69
JuvenJuvenile tuber42.64
Mother_GastroMother tuber of Gastrodia elata 43.45
Mother_JuvenMother tuber of Juvenile 34.82