Gene detail

Detail information of GWHGAAEX007628/evm.TU.scaffold_20.133

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|219848734\|ref\|YP_002463167.1\|	threonine synthase [Chloroflexus aggregans DSM 9485]
nr	gi\|695016365\|ref\|XP_009395088.1\|	PREDICTED: threonine synthase, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9MT28\|THRC_SOLTU	Threonine synthase, chloroplastic (Precursor)
trEMBL	tr\|B8A807\|B8A807_ORYSI	Putative uncharacterized protein {ECO:0000313\|EMBL:EEC71319.1}
TAIR	AT4G29840	Pyridoxal-5'-phosphate-dependent enzyme family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	6828074	6842215	-

Transcript Sequence
>GWHTAAEX007628 CTCAATAGCATTTCTCAATGATAAATATTAATCAGAATATCTTGACTAATTACAGCCTCGTTTCCAAAAAAATAAAACTAATTACACCCTCTTTCATATCTATCAAACCAATCCCTCATTTGGCGGCCGCCTCTGCTCTTCCACTCCATTCTTCGATCCATCCATGGCCGCTGCAGTTGCCTCTTCTTCGGCTCTCTCCTTCATCTCCTCAAATCGAAGCTCCTTCATTAACCCTAAAAGTACCATTCCTCTCGCTCGTCCCTCTTTCTCCACAAATTCCCGCCGCCTCCGCTCTCTCCCACACGCTGCCGCCTCCCCCTCGATCGAGGAAGAAAACGTCAGACGAAGCCGCCATGCTGAAGAGAGCATCCGCGAAGTAGCCGCCCGTCGCGATCATGCCTCTTCAATCAACTCCCACGGCTTCTCCGCTTGGTACGTTCCTTTCGGCCCCTCTTCCGACTCCGACGAGCGCTACTCACTCGACGACATCGTATACCGGAGCAGCTCCGGCGGACTTCTCGATGTCTGTCATGATTTTTCCGCCCTAGCAAAGTTCCCAGGCTCCTACTGGCGCGATCTCTTCGACTCCCGCGTCGGCCGCACGACCTGGCCATACGGTTCCGGCGTCTGGTCCAAGAAAGAATTCGTCCTCCCGGAGATCGACGCCGACCACATCGTTTCTCTCTTCGAAGGGAACTCCAATCTCTTCTGGGCGGAGCGCCTCGGCCGCGAGCTTCTCGACGGCATGCCCGATCTCTGGGTCAAGCACTGCGGCATCTCGCACACCGGATCCTTCAAGGATCTAGGAATGACAGTTCTTGTTTCCCAGGTCAACCGTCTCCGGAGCAAACCCCTCTCCCGGCCCATCGGAGGAGTCGGCTGCGCTTCCACCGGCGACACTTCCGCTGCTCTTTCCGCCTACTGCGCTGCTGCTAATATTCCCGCCATTGTCTTCCTGCCCACCGATCGCATTTCCCTTGCCCAGCTTGTCCAGCCAATCGCCAACGGCGCCACTGTCCTCTCCATAGATACTGATTTTGATGGCTGCATGAGGCTGATCCGTGAGGTCACTGCCGAGCTCCCCATTTATCTCGCGAATTCCCTGAACTCGCTTCGGCTGGAAGGCCAGAAGACAGCAGCTATTGAAATCCTGCAGCAGTTTGATTGGGAGGTTCCCGACTGGGTAATTGTCCCTGGAGGTAATCTCGGTAATATATACGCCTTCTATAAGGGGTTCAGCATGTGCAAAGAGCTTGGCCTTGTCGACCGAATGCCTCGCCTTGTCTGTGCCCAAGCTGCCAATGCCAATCCTCTATACCTCTATTACAAATCCAGATGGAGGGATTTTAAACCTGTCGTGGCTGCTGAAACCTTTGCATCTGCAATCCAGATCGGGGACCCAGTTTCGATAGACCGTGCTGTTTATGCTGTTCAGAATACGGATGGAATTGTTGAGGAAGCCACTGAGGAGGAACTAATGGATGCCATGTCGATTGCCGATAGAACTGGGATGTTTGCTTGCCCTCACACTGGCGTTGCCCTTGCTGCCCTCTTCAAATTGAGAGCCAGGGGAGTGATTGGCACAAATGATAGGACTGTTGTTGTTAGTACTGCCCATGGCCTCAAGTTCACACAAGCGAAGGTGGATTACCACTCCAATGGCATTGCAGATATGACTTGCAGGTTTGCTAACCCGCCTGTGAAAGTTAAGGCAGATTTTGGGTCTGTGATGGATGTTCTGAGGAAGAAGCTAGTCTTTAAGAAGTAATTGCTGGAACTTTGTGAGTCATTTTGATGTTGAGATCAGGAGCCTGGAGTGGAGCTGACAGACCAACAGGGAGAGGAGCTGAATTTCTATGGACAAATTTGAAGACCTACAGAGACCCTTTTTACTCCATTATTTATCATGTGAGAAGTAGAGTGATTTTTATCTATTTATAAATATTTAATGTAATAATTTAAGTTTATGATATTTATTGGACTTTGAGACAATAATTTCTTTTATTTTATTCTAGATGATTGTAATGGAATGAATGCTTTATTAACATTACTTAGAAATGCATCTATATTTCTCTACCTTATAG

Network for GWHGAAEX007628

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00291.24	PALP	173	483	1.80E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01733	thrC	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Pyrimidine metabolism	map00240
		Vitamin B6 metabolism	map00750

Gene Ontology

GO term	Ontology	Name
GO:0006520	Biological Process	cellular amino acid metabolic process
GO:0030170	Molecular Function	pyridoxal phosphate binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.920
SRP064423	SRR2545915	Juvenile tuber	15.650
SRP108465	SRR5643513	five period of Gastrodia elata	35.200
	SRR5643514	five period of Gastrodia elata	27.810
	SRR5643515	five period of Gastrodia elata	31.630
	SRR5643524	five period of Gastrodia elata	29.840
	SRR5643525	five period of Gastrodia elata	21.690
	SRR5643528	five period of Gastrodia elata	32.460
	SRR5643658	five period of Gastrodia elata	20.530
	SRR5643659	five period of Gastrodia elata	48.390
	SRR5643660	five period of Gastrodia elata	48.200
	SRR5643661	five period of Gastrodia elata	50.830
	SRR5643662	five period of Gastrodia elata	59.380
	SRR5643663	five period of Gastrodia elata	54.470
	SRR5643664	five period of Gastrodia elata	45.460
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	33.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.930
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	38.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.480
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	25.930
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.060
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	28.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	42.970
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.090
SRP279888	Gastro	Gastrodia elata tuber	39.32
	Juven	Juvenile tuber	31.88
	Mother_Gastro	Mother tuber of Gastrodia elata	16.86
	Mother_Juven	Mother tuber of Juvenile	20.76