Detail information of GWHGAAEX007629/evm.TU.scaffold_20.135
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0520 | 8.00E-161 | Uncharacterized conserved protein, contains IPT/TIG domain |
| nr | gi|743868150|ref|XP_010905494.1| | 0 | PREDICTED: calmodulin-binding transcription activator 4 [Elaeis guineensis] |
| Swissprot | tr|Q9FYG2|CMTA4_ARATH | 1.00E-161 | Calmodulin-binding transcription activator 4 |
| trEMBL | tr|M0TWJ0|M0TWJ0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P01330_001} |
| TAIR | AT1G67310 | 8.00E-161 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 6871433 | 6980738 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007629
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03859.15 | CG-1 | 16 | 129 | 3.20E-44 |
| PF01833.23 | TIG | 490 | 566 | 2.40E-05 |
| PF00612.26 | IQ | 903 | 921 | 0.0027 |
| PF00612.26 | IQ | 927 | 945 | 0.0019 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | CAMTA |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0003677 | Molecular Function | DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 177.800 |
| SRR2545915 | Juvenile tuber | 261.830 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.300 |
| SRR5643514 | five period of Gastrodia elata | 17.030 | |
| SRR5643515 | five period of Gastrodia elata | 21.350 | |
| SRR5643524 | five period of Gastrodia elata | 17.860 | |
| SRR5643525 | five period of Gastrodia elata | 36.530 | |
| SRR5643528 | five period of Gastrodia elata | 29.810 | |
| SRR5643658 | five period of Gastrodia elata | 29.760 | |
| SRR5643659 | five period of Gastrodia elata | 53.220 | |
| SRR5643660 | five period of Gastrodia elata | 60.190 | |
| SRR5643661 | five period of Gastrodia elata | 53.100 | |
| SRR5643662 | five period of Gastrodia elata | 35.100 | |
| SRR5643663 | five period of Gastrodia elata | 37.030 | |
| SRR5643664 | five period of Gastrodia elata | 41.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 75.840 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 55.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 94.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 87.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 121.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 85.100 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 84.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 53.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 36.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 36.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 42.92 |
| Juven | Juvenile tuber | 43.11 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 32.22 | |
| Mother_Juven | Mother tuber of Juvenile | 42.10 |