Gene detail

Detail information of GWHGAAEX007632/evm.TU.scaffold_20.138

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1100	3.00E-28	Predicted E3 ubiquitin ligase
nr	gi\|672189293\|ref\|XP_008813803.1\|	2.08E-71	PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Phoenix dactylifera]
Swissprot	tr\|Q9LDD1\|BRG3_ARATH	1.00E-28	Probable BOI-related E3 ubiquitin-protein ligase 3
trEMBL	tr\|W1PEK7\|W1PEK7_AMBTC	2.00E-56	Uncharacterized protein {ECO:0000313\|EMBL:ERN06388.1}
TAIR	AT3G12920	3.00E-28	SBP (S-ribonuclease binding protein) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	7113928	7115683	+

Transcript Sequence
>GWHTAAEX007632 CCCAGAATCCCCTCCCGAAAATTCACTCCAGCGCCTGCAATTTCGAGCGGCAACGGCAAATCCAAACTGCAGCGCCTACGCCAACGCTAACTGATAGGCCGATACAAACGAACTGCCATCGACGCCATGACCAAATAAATCACAGCCATCGGAAGCGCCCGCTATAAAATGGCGGTTCGGACCCATCACCCATCCAACCCCCCTTCCCCGGATTCACGCTCCAGGGATCAGAACGGCCTCCGGATGTGGCCGAACCGGGATCGATTGAGCGGACATTTCTTTCCTCCGGCACTCCAGCAGCAGCAGCAGCAGCAGCCTCCAAGCGATGATTGCGAGCAGCAGCCCAGCGCATCCAACAATGTACATCCCTTGATCAGAGATCGACCCCACGTTGAGCACGCTTACAATGGACGGTGGGCCGTCAATGTCTCCTTGCCTTCCATGGCGGCTGCAGCAGCATCCCTCCCTCAGCATCCCGGTCTTCCAGATCCGGCGTTCATGGCTGTTCCTTCTCCCTCTCCCGCCGGATTGCAGATCCCCGCCAATCAAGGGTTCAGAATGTACAACTCTGCTGGGGCGTCCACCAGCGGCCGTCCGGAGAATGTTTCCGCTCAATCCGTCGTCGGCTCCCCTTTCTCCCAGGAACTTCTGGCGCATTTCAGAAATCACAACCTCGAGATTAGCACCATCTTAAACAATTACAAAAACATGATTCGGGTGGGGATCGCAGAGACGGAGACGAGGCAGTGGAGATCGTTGCTTGCGATGCTGGAGCAGAAGGCATTTAAGCGGCTTCGGGAGAAGGACGCGGAGCTTGAGAGCGCGAATCGGAGGAATTCCGAGCTGGAGGAGAAGGTCCTTCAACTCTGCTCCGAGAACCAAATGTGGTTCAATCTTGCCAGCCAAAACGAGGCGCTAGCCTCCAACCTCAAAACAACCCTCGAGCAGGTCATGCAACAGAATGCCTCTGCGGAGGCGCCGCCTCCGACGGTGATGGAAGGCTACGGCGATACAGACGGATCGCTGTTACCTGCTAATGACGCCCACTCTTGTTTCAGAATCGAGGATCTGCTTGTGGATCCGCAAGTGGACGTAGATGCGACGGCTCAGAGGAACTACGAGCAGGTTCGTAGGAGGATGGTCTGCAAGGTTTGCCATGAGAAGGATATTACCGTTCTGGTTCTCAATTGCCGCCATCTCTGCTTGTGCGACGACTGTGAGACGAAGGTCGACAGGTGTCCCATCTGCAACAACCTGAAGGGAGGTTCCATCCATATTTTGATGCCGTGAGTCCGTTCCAACTATTGTGCCAGATGAGTTTCAATCTTTTTTGGTTAATCGTATAGCTGAAACCCTACACACAATGGGTATCTTGAAACGTTTCATTTCTTTTTCTTTTTTGGAACAAAACGTTTGATTTCATTCATATCTTTTAGTGCAAAAAAACAAAAAGAATTGAATGTAGAGAGACTGTATAAAACATCTCTTTTTACCTCCCTTTGTCGCGTAGCAAAAGACGCTGTTAGAACAATTTTTTAATTTTTG

Network for GWHGAAEX007632

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13920.5	zf-C3HC4_3	324	361	2.30E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.200
SRP064423	SRR2545915	Juvenile tuber	1.550
SRP108465	SRR5643513	five period of Gastrodia elata	0.790
	SRR5643514	five period of Gastrodia elata	0.750
	SRR5643515	five period of Gastrodia elata	3.450
	SRR5643524	five period of Gastrodia elata	0.790
	SRR5643525	five period of Gastrodia elata	0.150
	SRR5643528	five period of Gastrodia elata	1.760
	SRR5643658	five period of Gastrodia elata	0.280
	SRR5643659	five period of Gastrodia elata	2.290
	SRR5643660	five period of Gastrodia elata	0.570
	SRR5643661	five period of Gastrodia elata	1.300
	SRR5643662	five period of Gastrodia elata	0.990
	SRR5643663	five period of Gastrodia elata	0.720
	SRR5643664	five period of Gastrodia elata	3.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.870
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.470
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.520
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.560
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.090
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.090
SRP279888	Gastro	Gastrodia elata tuber	0.13
	Juven	Juvenile tuber	1.25
	Mother_Gastro	Mother tuber of Gastrodia elata	12.42
	Mother_Juven	Mother tuber of Juvenile	13.51