Gene detail

Detail information of GWHGAAEX007633/evm.TU.scaffold_20.140

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|71907234\|ref\|YP_284821.1\|	5.00E-19	protein kinase:GAF [Dechloromonas aromatica RCB]
nr	gi\|672193821\|ref\|XP_008776136.1\|	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Phoenix dactylifera]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	1.00E-128	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|A0A059A2L5\|A0A059A2L5_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW48372.1}
TAIR	AT2G36570	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	7124278	7126985	-

Transcript Sequence
>GWHTAAEX007633 GTCGGAATAATAATATTTTATTAAATAAACTATAAAAATTTATTATAAGAAAAAATGTATACACAAAAAAATCTACAGAATCAAAATTTTGGAATGTTATTTTTACATATAAACTTTAAAGAATATATTCAATTAATAATAGCTGAATGACATTAAAAAAAGAAATATATAAAATAAATTGAAGTCAGAAAATAAAAGCTGGAGTGGGGGTCAATCGTTGTTCAAAGCAAAGCGCGCCTGCCCGCAGGCACCTCTCCCTCCGCCCCAATTCAATTCAAAGAAAAAGAAAGGCTGCGGCTCCCTAAAAAGCAAATGCAGTGCCTAAAACCGAGACGACCTCCTTTGTCCCTTCACCTCGCCATGGCCTTCCTTCTCCTCCTCGTCTCCCCCCTGCTTCCATCGCTGCAAGCGGCGAGTGACACGGAGGCCCTATCCATCTTCCGACACGGCGCCGACGCCCACGGCATCCTCGCCTCCAACTGGACCACTGCGGACGCGTGCGGCGGCTTCTGGCGCGGCGTCGTGTGCTCAGCAGGCGGCCGCGTGACGTCCCTATCGCTCCCTTCCTTAGACCTTCGCGGCCCCCTCGACCCCCTCTCCCATCTCTCTCACCTCCGCCTCCTCGACCTCCACGACAATCGCATCAACGGGACGCTCCTCCCCTTCCTCTTCTCCCTCCCCAACCTCAGCCTCCTATACCTCTCCCGCAATTCCCTCTCCGGCGGCATCCCCCCCTCCATCGGCTGCCTCGCCAGCCTCATCCGCGTCGACCTCTCCGATAACAACCTGGACGGCCTGATCCCATGCGAGGCCCTCTCCAGCCTCACCCGCCTCCTCACCCTCCGCCTACAGTGCAATCTCCTCTCCGGCAACCTCCCGGACCTCGCCGCCGCTCTCCCCGCCCTCGTTCAGCTTAATGTCTCCAACAATGACCTGGCCGGAAGGGCGCCAGACGGCATCCTGGCCAAGTTCGGCCTGGACGCCGTGTCCGGCAATGCTGGACTCTGCGGGCTCACGCCTCCGCTCCCCCTCTGCGATTCCCCTCCATCTTCTTCTTCTCTGCAAACAGAATATCAAAAAAGGAGTCTGAGCACCGCCGCAATCATCAGCATCGTAATAAGCAGCATCGCCTTGTTCGCCTTCTTTCTCTCCGCCTACTGCTTCTGCGCAGGCCGCCGTCGCACCGGAAGCGACGGAAAGGTAGACGCCGAAGAGCAGAGGAGTTGCGGAGGAGGCGGCGATGCCGGGAAGCAGAACCAGCTGGTGTTCTTACAAGGAACGGCGAGGCCGTTCGAATTGGACGAGCTTCTCCGGGCGTCAGCGGAGATGCTCGGAAGGGGAAGCATAGGCACAGTCTACAAGGCGGTTCTCGAGGGCGGGGCGGCGGTGGCAGTGAAACGTCTCAAAGACTCCAATCCCTGCCCTCGCAAGGATTTCAACCAGTACATGAACCTCATCGGCCGTCTCTCTCACCCCAACATCCTTCCCCTCCGAGCCTACTGCTACGCCGAGCAGGAAAAGCTGCTCATTTACGACTATCTCCCAAACGGAAACCTCTCCTCCGCCCTCCGTTTCTCGACCGGGAGGGCGCCGCTGGATTGGACGACGAGGGTGAGCCTGGCTCTAGGAGCGGCGCGCGGGTTAGCTCAAATCCACGCCGAGTGCGCCGGCTCGAAGATCCCCCACGGGAACATCAAATCCTCCAACGTGCTGCTGGACAAGAACGGAGCCGCCCTCGTCTCCGACTTCGGGCTGGCGCTCCTGCTCAGCCCGGCTCAGGCCACCGCCGGACACGGCGGCTGCGCAGCGCCGGAGCAGGAGGACACCCGCAGCCTGTCGCAGGAGGCCGACGTCTACGCGTTCGGCATCATACTGCTGGAGATTCTCACCGGCAGGCCCGCCCACACGGGCCAGGGGACGTCTTTGCCAGAGTGGGTGAAGTCGGCGGTGGCAGAGGACTGGACGGCTGAGATCTTCGACGCCGGACTGATGCGGTACAAGAATGCCGGGGACGAGATGCTGGCGGTGCTGCGGCTGGCTCTGGCCTGCCTCGCTCGCCTGCCGGATGATAGGCCTGCGATGTCCGAGGTGGTGGCGATGATACAGGAGATCAGGGTTCAGGACTCGCCGCTCGCCGACGAGGATGACGAGATCGACGAGTCTCGCCTCGCCTCTGCGTCGCCCTCGCTTCCTACCACCGATTGAGTGTTCTTCTGTTATTGTTTCTCTCTGAGAAAGCCTCGACAATTAGATATAGATGTATCAAAGCTTTATGTCTTAGCGCTTAACTTCTTACTAATGTATCCCTTCCTGCCAACTTCGTGTTTCGGGCAAATTGTCAGCCATAGTCTTCACTCAGAAGATACCTAATCCAACAAGCTATGCCAGCGGTAGCAAACCGATGAAGCGAAGAACTCAAAAGCTGATCGTATCTGTAAGAAATAGTAATTGAGAAAAGCCAAGAATTAAGCGAGGCCGCCGAACTAAGTGAGCTACGGCGGAGCTCTTCCGACTTTTTTATATTATTACCGAATGGAATAAAAGTGCGCAAACGCCCCCAATATTCTTCCAAAAAGAATTCGAAGTGACAAACAGTAGCACAGCTGCAACACCATAAACGCGCGGCAACTGCGCTTGCGAGACATAAAAGATGCTTTAAAAAGCAAGAACAGAGCCTGCGCTGAAGCGCTATGCAGCTGCGTTGCCTG

Network for GWHGAAEX007633

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	338	595	3.40E-31

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.990
SRP064423	SRR2545915	Juvenile tuber	6.230
SRP108465	SRR5643513	five period of Gastrodia elata	5.070
	SRR5643514	five period of Gastrodia elata	6.970
	SRR5643515	five period of Gastrodia elata	23.960
	SRR5643524	five period of Gastrodia elata	6.720
	SRR5643525	five period of Gastrodia elata	3.300
	SRR5643528	five period of Gastrodia elata	5.050
	SRR5643658	five period of Gastrodia elata	1.390
	SRR5643659	five period of Gastrodia elata	37.730
	SRR5643660	five period of Gastrodia elata	8.200
	SRR5643661	five period of Gastrodia elata	23.820
	SRR5643662	five period of Gastrodia elata	19.130
	SRR5643663	five period of Gastrodia elata	7.010
	SRR5643664	five period of Gastrodia elata	25.940
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.700
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.270
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.400
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.030
SRP279888	Gastro	Gastrodia elata tuber	0.77
	Juven	Juvenile tuber	4.25
	Mother_Gastro	Mother tuber of Gastrodia elata	19.00
	Mother_Juven	Mother tuber of Juvenile	7.52