Detail information of GWHGAAEX007638/evm.TU.scaffold_20.147
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|332796299|ref|YP_004457799.1| | 1.00E-95 | ATP-dependent DNA ligase I [Acidianus hospitalis W1] |
| KOG | KOG0967 | 0 | ATP-dependent DNA ligase I |
| nr | gi|672128283|ref|XP_008787626.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103705614 [Phoenix dactylifera] |
| Swissprot | tr|Q42572|DNLI1_ARATH | 4.00E-156 | DNA ligase 1 (Precursor) |
| trEMBL | tr|M0SJY9|M0SJY9_MUSAM | 0 | DNA ligase {ECO:0000256|RuleBase:RU000617} |
| TAIR | AT1G66730_2 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 7188926 | 7299477 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007638
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07522.13 | DRMBL | 270 | 375 | 6.50E-18 |
| PF04675.13 | DNA_ligase_A_N | 763 | 938 | 2.20E-35 |
| PF01068.20 | DNA_ligase_A_M | 1009 | 1229 | 4.60E-45 |
| PF04679.14 | DNA_ligase_A_C | 1255 | 1363 | 3.70E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10747 | LIG1 | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Nucleotide excision repair | map03420 | ||
| Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0051103 | Biological Process | DNA ligation involved in DNA repair |
| GO:0071897 | Biological Process | DNA biosynthetic process |
| GO:0006281 | Biological Process | DNA repair |
| GO:0006310 | Biological Process | DNA recombination |
| GO:0003909 | Molecular Function | DNA ligase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003910 | Molecular Function | DNA ligase (ATP) activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.990 |
| SRR2545915 | Juvenile tuber | 9.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.240 |
| SRR5643514 | five period of Gastrodia elata | 11.990 | |
| SRR5643515 | five period of Gastrodia elata | 9.500 | |
| SRR5643524 | five period of Gastrodia elata | 10.910 | |
| SRR5643525 | five period of Gastrodia elata | 2.210 | |
| SRR5643528 | five period of Gastrodia elata | 2.540 | |
| SRR5643658 | five period of Gastrodia elata | 4.390 | |
| SRR5643659 | five period of Gastrodia elata | 7.760 | |
| SRR5643660 | five period of Gastrodia elata | 9.040 | |
| SRR5643661 | five period of Gastrodia elata | 8.100 | |
| SRR5643662 | five period of Gastrodia elata | 7.390 | |
| SRR5643663 | five period of Gastrodia elata | 7.080 | |
| SRR5643664 | five period of Gastrodia elata | 7.030 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 14.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.940 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.560 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.670 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.670 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.49 |
| Juven | Juvenile tuber | 11.52 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.56 | |
| Mother_Juven | Mother tuber of Juvenile | 6.63 |