Detail information of GWHGAAEX007643/evm.TU.scaffold_20.152


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428317650|ref|YP_007115532.1|7.00E-18RNA 2'-phosphotransferase [Oscillatoria nigro-viridis PCC 7112]
KOGKOG22781.00E-98RNA:NAD 2'-phosphotransferase TPT1
nrgi|720026138|ref|XP_010264162.1|1.76E-118PREDICTED: tRNA 2'-phosphotransferase 1-like [Nelumbo nucifera]
trEMBLtr|J3MB15|J3MB15_ORYBR6.00E-116Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G12090.1}
TAIRAT2G453301.00E-98RNA 2'-phosphotransferase, Tpt1 / KptA family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002674277447469509+
Transcript Sequence

Network for GWHGAAEX007643

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01885.15PTS_2-RNA932741.90E-61
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligation
GO:0016772Molecular Functiontransferase activity, transferring phosphorus-containing groups

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.260
SRR2545915Juvenile tuber9.900
SRP108465SRR5643513five period of Gastrodia elata17.350
SRR5643514five period of Gastrodia elata24.800
SRR5643515five period of Gastrodia elata20.530
SRR5643524five period of Gastrodia elata22.450
SRR5643525five period of Gastrodia elata19.320
SRR5643528five period of Gastrodia elata21.110
SRR5643658five period of Gastrodia elata19.720
SRR5643659five period of Gastrodia elata9.430
SRR5643660five period of Gastrodia elata11.290
SRR5643661five period of Gastrodia elata8.540
SRR5643662five period of Gastrodia elata6.380
SRR5643663five period of Gastrodia elata5.940
SRR5643664five period of Gastrodia elata5.150
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.180
SRR6049655Rhizomagastrodiae_C368-T10_good_117.460
SRR6049656Rhizomagastrodiae_C368-T07_good_117.850
SRR6049657Rhizomagastrodiae_C368-T07_good_114.190
SRR6049658Rhizomagastrodiae_C368-T04_good_113.890
SRR6049659Rhizomagastrodiae_C368-T04_good_114.180
SRR6049660Rhizomagastrodiae_C368-T01_good_114.780
SRR6049661Rhizomagastrodiae_C368-T04_good_113.340
SRR6049662Rhizomagastrodiae_C368-T01_good_121.740
SRR6049663Rhizomagastrodiae_C368-T01_good_116.850
SRR6049664Rhizomagastrodiae_C368-T10_good_127.600
SRR6049665Rhizomagastrodiae_C368-T10_good_127.600
SRP279888GastroGastrodia elata tuber 6.33
JuvenJuvenile tuber13.19
Mother_GastroMother tuber of Gastrodia elata 15.77
Mother_JuvenMother tuber of Juvenile 14.66