Detail information of GWHGAAEX007644/evm.TU.scaffold_20.153


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|426400741|ref|YP_007019713.1|5.00E-1750S ribosomal protein L7/L12 [Candidatus Endolissoclinum faulkneri L2]
KOGKOG17155.00E-66Mitochondrial/chloroplast ribosomal protein L12
nrgi|672128335|ref|XP_008787652.1|1.16E-75PREDICTED: 54S ribosomal protein L12, mitochondrial-like [Phoenix dactylifera]
Swissprottr|Q1XDE8|RK12_PYRYE2.00E-1750S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|F6HF68|F6HF68_VITVI1.00E-73Putative uncharacterized protein {ECO:0000313|EMBL:CCB51024.1}
TAIRAT1G701905.00E-66Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002674781367481993-
Transcript Sequence

Network for GWHGAAEX007644

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14009.5DUF4228171732.90E-29
PF00542.18Ribosomal_L123464111.10E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.470
SRR2545915Juvenile tuber8.870
SRP108465SRR5643513five period of Gastrodia elata15.380
SRR5643514five period of Gastrodia elata15.460
SRR5643515five period of Gastrodia elata29.570
SRR5643524five period of Gastrodia elata15.630
SRR5643525five period of Gastrodia elata20.850
SRR5643528five period of Gastrodia elata14.220
SRR5643658five period of Gastrodia elata12.750
SRR5643659five period of Gastrodia elata12.730
SRR5643660five period of Gastrodia elata9.480
SRR5643661five period of Gastrodia elata8.090
SRR5643662five period of Gastrodia elata12.240
SRR5643663five period of Gastrodia elata12.450
SRR5643664five period of Gastrodia elata10.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.330
SRR6049655Rhizomagastrodiae_C368-T10_good_136.270
SRR6049656Rhizomagastrodiae_C368-T07_good_119.460
SRR6049657Rhizomagastrodiae_C368-T07_good_121.260
SRR6049658Rhizomagastrodiae_C368-T04_good_126.660
SRR6049659Rhizomagastrodiae_C368-T04_good_137.680
SRR6049660Rhizomagastrodiae_C368-T01_good_139.870
SRR6049661Rhizomagastrodiae_C368-T04_good_124.390
SRR6049662Rhizomagastrodiae_C368-T01_good_116.130
SRR6049663Rhizomagastrodiae_C368-T01_good_124.330
SRR6049664Rhizomagastrodiae_C368-T10_good_120.750
SRR6049665Rhizomagastrodiae_C368-T10_good_120.750
SRP279888GastroGastrodia elata tuber 13.07
JuvenJuvenile tuber15.98
Mother_GastroMother tuber of Gastrodia elata 254.03
Mother_JuvenMother tuber of Juvenile 325.58