Detail information of GWHGAAEX007645/evm.TU.scaffold_20.154


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|530780331|ref|YP_008432137.1|2.00E-133Minichromosome maintenance protein MCM [Thermofilum sp. 1910b]
KOGKOG04770DNA replication licensing factor, MCM2 component
nrgi|672157311|ref|XP_008798359.1|0PREDICTED: DNA replication licensing factor MCM2 [Phoenix dactylifera]
Swissprottr|B8BKI8|MCM2_ORYSI0DNA replication licensing factor MCM2
trEMBLtr|C6JS28|C6JS28_SORBI0Putative uncharacterized protein Sb0019s004400 {ECO:0000313|EMBL:EES20389.1}
TAIRAT1G449000minichromosome maintenance (MCM2/3/5) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002674882567527139-
Transcript Sequence

Network for GWHGAAEX007645

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12619.7MCM2_N351997.10E-21
PF14551.5MCM_N2253181.60E-13
PF17207.2MCM_OB3244515.80E-36
PF00493.22MCM4928354.80E-138
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02540MCM2 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:1905775Biological Processnegative regulation of DNA helicase activity
GO:0006270Biological ProcessDNA replication initiation
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
GO:0005634Cellular Componentnucleus
GO:0042555Cellular ComponentMCM complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms2.300
SRR2545915Juvenile tuber5.400
SRP108465SRR5643513five period of Gastrodia elata8.190
SRR5643514five period of Gastrodia elata8.780
SRR5643515five period of Gastrodia elata6.660
SRR5643524five period of Gastrodia elata7.270
SRR5643525five period of Gastrodia elata1.790
SRR5643528five period of Gastrodia elata0.940
SRR5643658five period of Gastrodia elata2.570
SRR5643659five period of Gastrodia elata8.150
SRR5643660five period of Gastrodia elata7.030
SRR5643661five period of Gastrodia elata8.270
SRR5643662five period of Gastrodia elata3.980
SRR5643663five period of Gastrodia elata6.690
SRR5643664five period of Gastrodia elata2.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.480
SRR6049655Rhizomagastrodiae_C368-T10_good_113.400
SRR6049656Rhizomagastrodiae_C368-T07_good_114.460
SRR6049657Rhizomagastrodiae_C368-T07_good_110.300
SRR6049658Rhizomagastrodiae_C368-T04_good_16.400
SRR6049659Rhizomagastrodiae_C368-T04_good_14.270
SRR6049660Rhizomagastrodiae_C368-T01_good_19.350
SRR6049661Rhizomagastrodiae_C368-T04_good_112.030
SRR6049662Rhizomagastrodiae_C368-T01_good_119.180
SRR6049663Rhizomagastrodiae_C368-T01_good_112.960
SRR6049664Rhizomagastrodiae_C368-T10_good_116.550
SRR6049665Rhizomagastrodiae_C368-T10_good_116.550
SRP279888GastroGastrodia elata tuber 2.78
JuvenJuvenile tuber6.00
Mother_GastroMother tuber of Gastrodia elata 2.76
Mother_JuvenMother tuber of Juvenile 2.69