Detail information of GWHGAAEX007649/evm.TU.scaffold_20.160
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-141 | FOG: PPR repeat |
| nr | gi|743858380|ref|XP_010942337.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Elaeis guineensis] |
| Swissprot | tr|Q9FLS9|PP441_ARATH | 3.00E-142 | Pentatricopeptide repeat-containing protein At5g61800 |
| trEMBL | tr|A0A067EUT6|A0A067EUT6_CITSI | 4.00E-165 | Uncharacterized protein {ECO:0000313|EMBL:KDO57645.1} (Fragment) |
| TAIR | AT5G61800 | 1.00E-141 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 7662564 | 7664843 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007649
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 178 | 203 | 0.00015 |
| PF13041.5 | PPR_2 | 206 | 245 | 6.60E-10 |
| PF01535.19 | PPR | 281 | 302 | 0.45 |
| PF01535.19 | PPR | 309 | 339 | 0.0037 |
| PF01535.19 | PPR | 350 | 372 | 0.092 |
| PF01535.19 | PPR | 382 | 409 | 0.0064 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.420 |
| SRR2545915 | Juvenile tuber | 1.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.210 |
| SRR5643514 | five period of Gastrodia elata | 2.840 | |
| SRR5643515 | five period of Gastrodia elata | 4.350 | |
| SRR5643524 | five period of Gastrodia elata | 3.600 | |
| SRR5643525 | five period of Gastrodia elata | 3.680 | |
| SRR5643528 | five period of Gastrodia elata | 3.190 | |
| SRR5643658 | five period of Gastrodia elata | 3.060 | |
| SRR5643659 | five period of Gastrodia elata | 4.840 | |
| SRR5643660 | five period of Gastrodia elata | 6.000 | |
| SRR5643661 | five period of Gastrodia elata | 6.590 | |
| SRR5643662 | five period of Gastrodia elata | 4.810 | |
| SRR5643663 | five period of Gastrodia elata | 4.770 | |
| SRR5643664 | five period of Gastrodia elata | 6.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.920 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.700 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.920 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.940 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.27 |
| Juven | Juvenile tuber | 7.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.14 | |
| Mother_Juven | Mother tuber of Juvenile | 5.73 |