Detail information of GWHGAAEX007650/evm.TU.scaffold_20.161
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| nr | gi|695069469|ref|XP_009381713.1| | 1.86E-49 | PREDICTED: ethylene-responsive transcription factor LEP-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9M644|LEP_ARATH | 1.00E-33 | Ethylene-responsive transcription factor LEP |
| trEMBL | tr|M0RJ12|M0RJ12_MUSAM | 2.00E-52 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P17370_001} |
| TAIR | AT5G13910 | 3.00E-33 | Integrase-type DNA-binding superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 7666171 | 7666973 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007650
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00847.19 | AP2 | 40 | 89 | 3.60E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AP2/ERF-ERF |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.360 |
| SRR5643514 | five period of Gastrodia elata | 0.090 | |
| SRR5643515 | five period of Gastrodia elata | 0.340 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.610 | |
| SRR5643528 | five period of Gastrodia elata | 0.240 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.390 | |
| SRR5643660 | five period of Gastrodia elata | 0.750 | |
| SRR5643661 | five period of Gastrodia elata | 0.440 | |
| SRR5643662 | five period of Gastrodia elata | 1.190 | |
| SRR5643663 | five period of Gastrodia elata | 0.330 | |
| SRR5643664 | five period of Gastrodia elata | 0.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.560 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.250 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.370 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.800 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.42 |
| Juven | Juvenile tuber | 0.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.85 | |
| Mother_Juven | Mother tuber of Juvenile | 0.34 |