Gene detail

Detail information of GWHGAAEX007653/evm.TU.scaffold_20.163

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2050	2.00E-172	Puf family RNA-binding protein
nr	gi\|672180038\|ref\|XP_008810199.1\|	0	PREDICTED: pumilio homolog 24 [Phoenix dactylifera]
Swissprot	tr\|Q9LRZ3\|PUM24_ARATH	0	Pumilio homolog 24
trEMBL	tr\|M0S3B4\|M0S3B4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P26570_001}
TAIR	AT3G16810	2.00E-172	pumilio 24

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000026	7754958	7789440	-

Transcript Sequence
>GWHTAAEX007653 GGTTAGGGTTAAATCCCTCTTGAGCGAACGTTGATCCCTGTTTTCCTATTAGGAACCAAAGCCTAGTTTGAATGTTTGAGCGCTGTTTCAATCGAGCGGCTGAACAAGTGAGCAGCAGCAGCGAGGGCGAGCGAGTTCTGCCTTCTGCCTTGGGATGGCGGCTGCTGGTAAGCTCGGTGGTTCGAAGAAAAGGATGCGAGAGTTAGCCAACTCGAAGGGAGTGGAGAAGCCTAGTTTCTCGAAGCAAACAAAGGTGAAACATTTTAAGAAAAAGGCGAAAGCGAGATCCTCAGTGGCCAATACTGCTAATCCAAAGCAGTCCAATAAAGCTGGGTCTGATTTTGGGGTAATCATGGATTCGGCAAACGATTTCGGAGGTTCAAAGAAGAGAAAACTGGATGCCACCGCGGCTAAAGAAGAAGGAAAGCCCAAGTTCTTCAAACAATCAAAATCCGCTGAGACTATGCCTTCTAATAAGAAACACCTGAACTCCCCTGGAAAAGATGCCACATTTCATAAGAAGAAGGAAGCCCAAACACCAAAAGAACGACGCCTAGCAGCCAAGGAAAAGGCAGAAGCCAGAAAGTCGAAGAGAAAGCCAAATTACAATCTTGAGAAAGAACTAGCTTCACTTTGGGAAAAGATGAGATGCTATAATGTTGATAATAAAGAGCGATCAAAGTTCGTTAGTGAAGCCCTGCTGAAGATGTCAGGAAAGCTACTGGAAGTTGCCAGTTCACATATCTCTACTCGAGTACTTCAAAGTTGTGTTAAATACGGGTCTCATGAAGAAAGAAACAATGTCTTTGAAGAACTTCGGCCACATCTCCTAACTCTTTCGCGTAAGAAGTATGCAGTTCATCTTGTAAAGAAACTCTTAGATATTGCAAGCAAACAACAATTTGAAGGATTCATTTCATCACTACATGGGCATGTTAGCTATCTAATTCGACACACTGTTGGATCAGCTGTTGTTGAGCATGCATATCATTTGGCAAATGGGTCTCAAAGACAACGTCTTTTGATGGAAATGTATTCAACTGAACTTCAATTATTCAAGGATCTCACCTTGACAAATACTGGAAGCTTGGCAGACATAATTTCAAGACTCAAACTACAGAAGTCTTCAGTATTACAATATATGACCTCTATAATTCAGCCACTTCTGGAGAAAGGGATTGTGGAATACTCAATCATACATGCTGCCTTAGTGGAGTATTTTACAATAGCTGACAGGTCTTCAGCAACTGATGTGATCCAACAGTTGCTATCTCTTATTTCTCAAGAGTCTGCCACAGATGACAACCTTCAAGCATCTAACAAGAAGAAAAATAAAAGGAGAAAAATGAGAACTCCCCTTTTGAACATGATGCACACAAGAGATGGACTGAAGATTGGCATCCTTTGCATCAAGCATGGAACTGCTAAGGATCGAAAGAAAATTGTGAAGGGAATTAAAGATCACATCAAAAAGCTAGCATTAGACCAATATGGGAGTCTTTTGCTCTCATGCATCCTTTCAGTTGTCGATGACACCAAACTTGTAACTAAGATTATCATTCGTGAGCTTCAATCTATGCTTAAAGAACTTCTGCTGGATAAGAATGGAAGACGTCCATTATTGCTGTTGCTCCATCCGCAGTGCTACCGCTATTTTTCTTCTGAGGATCTAGCTTGTCTTAATTTAGTTGTGCCTTCTCTCTGCACTCAGGATGAGAGGGAAGAGGAGGTTTCTGCAGTTGGCCCAGAGAAGATATTAGAAAATGAAACCAATGCTATAACAACTCACAACAATGAGCAATCGGATTCTATAATGACCATGCAATCATCTGTGGGTGGTAAGAAGGATGCTTTAGTAAGGAGAAAGGAGCTATTGGTTGATAGTGGTCTGGCGGAGTGCCTTGTTGAAAGTTGCATCAACACTGCTGATGAGCTACTTCGATCAAATTTTGGCCGTGAAGTAATCTTTGAGGTTGCTGTCGGTGGTAATGATGGCATTCTGCAGTCGCATAATGAAAGAATAGCTGATTTGCATAGAGCAATAGCTGCCATTGCAGCTTCTCCCAAGTCTGAAGAGTCTGGGAAGGATCATATCTTTGAGAACTTCCACTCAAGCAGGACCATAAGAAAGCTTGTTTTGGATTGTCCTTCCTTTGCTGAAACCTTGTGGAAATTGGCTTTGGAAGGAAAGAGCCAGATGTGGGCTCATGGCCACAGTTGCAAGGTGGTTTCTGCTTTCCTTGAGTCTTCGGAACCCACTGTAAGAGACCTCGCCAAGACTGAGCTGCAGCCTTTGGTAGACTGTGGTACATTTGAACTCTCAGAAACAAAATTATAATTAAAAAATTTCTTATTCAAGTAGGATCTGTTGGTCTTTTATTTTTCAATTGTCTATAGTTATTCCATTTGAAATATAGTTTGAAGTTTACCAGTGACATTTTTTCTTTCAAGTTGGTACTTTTCATTCTGAAGCAACTTCTTCGGGATGCTCTGGTTTTTGAGGTACCCATAATATAATTGTCAGACTCAATATCATGATTAAACATCATCATTATAATACATTTATCAAATCATTGGCTTTACA

Network for GWHGAAEX007653

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08144.10	CPL	561	661	1.00E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.420
SRP064423	SRR2545915	Juvenile tuber	47.590
SRP108465	SRR5643513	five period of Gastrodia elata	34.420
	SRR5643514	five period of Gastrodia elata	35.300
	SRR5643515	five period of Gastrodia elata	29.670
	SRR5643524	five period of Gastrodia elata	39.000
	SRR5643525	five period of Gastrodia elata	9.780
	SRR5643528	five period of Gastrodia elata	10.760
	SRR5643658	five period of Gastrodia elata	11.810
	SRR5643659	five period of Gastrodia elata	28.060
	SRR5643660	five period of Gastrodia elata	27.910
	SRR5643661	five period of Gastrodia elata	30.260
	SRR5643662	five period of Gastrodia elata	19.320
	SRR5643663	five period of Gastrodia elata	16.760
	SRR5643664	five period of Gastrodia elata	18.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	46.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	40.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	46.620
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.450
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.250
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	36.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	36.550
SRP279888	Gastro	Gastrodia elata tuber	30.70
	Juven	Juvenile tuber	74.68
	Mother_Gastro	Mother tuber of Gastrodia elata	27.85
	Mother_Juven	Mother tuber of Juvenile	57.53