Detail information of GWHGAAEX007654/evm.TU.scaffold_20.164
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110640159|ref|YP_680369.1| | 2.00E-42 | naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406] |
| nr | gi|693302186|gb|AIS35912.1| | 0 | chalcone synthase [Phalaenopsis equestris] |
| Swissprot | tr|O23731|CHS8_BROFI | 0 | Chalcone synthase 8 |
| trEMBL | tr|A0A096ZX66|A0A096ZX66_PHAEQ | 0 | Chalcone synthase {ECO:0000313|EMBL:AIS35912.1} |
| TAIR | AT5G13930 | 0 | Chalcone and stilbene synthase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 7810660 | 7812346 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007654
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00195.18 | Chal_sti_synt_N | 10 | 231 | 1.00E-114 |
| PF02797.14 | Chal_sti_synt_C | 240 | 390 | 4.10E-68 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00660 | CHS | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Flavonoid biosynthesis | map00941 | ||
| Circadian rhythm - plant | map04712 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.810 |
| SRR2545915 | Juvenile tuber | 0.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.980 |
| SRR5643514 | five period of Gastrodia elata | 13.490 | |
| SRR5643515 | five period of Gastrodia elata | 27.500 | |
| SRR5643524 | five period of Gastrodia elata | 33.600 | |
| SRR5643525 | five period of Gastrodia elata | 6.860 | |
| SRR5643528 | five period of Gastrodia elata | 3.180 | |
| SRR5643658 | five period of Gastrodia elata | 1.670 | |
| SRR5643659 | five period of Gastrodia elata | 4.730 | |
| SRR5643660 | five period of Gastrodia elata | 2.980 | |
| SRR5643661 | five period of Gastrodia elata | 2.690 | |
| SRR5643662 | five period of Gastrodia elata | 0.640 | |
| SRR5643663 | five period of Gastrodia elata | 0.910 | |
| SRR5643664 | five period of Gastrodia elata | 1.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 47.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.680 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.740 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.110 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.22 |
| Juven | Juvenile tuber | 11.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.56 | |
| Mother_Juven | Mother tuber of Juvenile | 43.54 |