Detail information of GWHGAAEX007656/evm.TU.scaffold_20.167


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|698437865|ref|XP_009804168.1|1.89E-44PREDICTED: centromere protein S [Nicotiana sylvestris]
trEMBLtr|M0SFS8|M0SFS8_MUSAM4.00E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P18620_001}
TAIRAT5G509306.00E-39Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002679079867923285+
Transcript Sequence

Network for GWHGAAEX007656

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15630.5CENP-S21944.30E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11511APITD1, CENPS, MHF1 Fanconi anemia pathway map03460

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0071821Cellular ComponentFANCM-MHF complex

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.940
SRR2545915Juvenile tuber19.570
SRP108465SRR5643513five period of Gastrodia elata16.720
SRR5643514five period of Gastrodia elata26.590
SRR5643515five period of Gastrodia elata20.440
SRR5643524five period of Gastrodia elata22.130
SRR5643525five period of Gastrodia elata24.570
SRR5643528five period of Gastrodia elata23.410
SRR5643658five period of Gastrodia elata25.740
SRR5643659five period of Gastrodia elata15.360
SRR5643660five period of Gastrodia elata12.390
SRR5643661five period of Gastrodia elata15.450
SRR5643662five period of Gastrodia elata13.160
SRR5643663five period of Gastrodia elata15.990
SRR5643664five period of Gastrodia elata13.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.690
SRR6049655Rhizomagastrodiae_C368-T10_good_120.570
SRR6049656Rhizomagastrodiae_C368-T07_good_118.740
SRR6049657Rhizomagastrodiae_C368-T07_good_113.280
SRR6049658Rhizomagastrodiae_C368-T04_good_114.130
SRR6049659Rhizomagastrodiae_C368-T04_good_19.320
SRR6049660Rhizomagastrodiae_C368-T01_good_113.660
SRR6049661Rhizomagastrodiae_C368-T04_good_112.160
SRR6049662Rhizomagastrodiae_C368-T01_good_116.800
SRR6049663Rhizomagastrodiae_C368-T01_good_115.460
SRR6049664Rhizomagastrodiae_C368-T10_good_122.250
SRR6049665Rhizomagastrodiae_C368-T10_good_122.250
SRP279888GastroGastrodia elata tuber 20.82
JuvenJuvenile tuber25.38
Mother_GastroMother tuber of Gastrodia elata 17.20
Mother_JuvenMother tuber of Juvenile 16.57