Detail information of GWHGAAEX007657/evm.TU.scaffold_20.168
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|330466565|ref|YP_004404308.1| | 1.00E-68 | glycoside hydrolase family protein [Verrucosispora maris AB-18-032] |
| nr | gi|743813328|ref|XP_010929679.1| | 0 | PREDICTED: endoglucanase 12-like [Elaeis guineensis] |
| Swissprot | tr|Q7XUK4|GUN12_ORYSJ | 0 | Endoglucanase 12 |
| trEMBL | tr|M0T561|M0T561_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P08120_001} |
| TAIR | AT1G65610 | 0 | Six-hairpin glycosidases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000026 | 7926072 | 7945684 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007657
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 101 | 573 | 1.50E-117 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.400 |
| SRR2545915 | Juvenile tuber | 2.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.760 |
| SRR5643514 | five period of Gastrodia elata | 1.780 | |
| SRR5643515 | five period of Gastrodia elata | 1.370 | |
| SRR5643524 | five period of Gastrodia elata | 1.370 | |
| SRR5643525 | five period of Gastrodia elata | 2.390 | |
| SRR5643528 | five period of Gastrodia elata | 4.040 | |
| SRR5643658 | five period of Gastrodia elata | 1.590 | |
| SRR5643659 | five period of Gastrodia elata | 1.630 | |
| SRR5643660 | five period of Gastrodia elata | 1.510 | |
| SRR5643661 | five period of Gastrodia elata | 2.670 | |
| SRR5643662 | five period of Gastrodia elata | 1.760 | |
| SRR5643663 | five period of Gastrodia elata | 1.380 | |
| SRR5643664 | five period of Gastrodia elata | 1.640 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.400 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.340 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.280 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.29 |
| Juven | Juvenile tuber | 0.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.11 | |
| Mother_Juven | Mother tuber of Juvenile | 0.38 |