Detail information of GWHGAAEX007658/evm.TU.scaffold_20.169


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16553.00E-37Protein involved in vacuolar protein sorting
nrgi|695034497|ref|XP_009404737.1|9.06E-41PREDICTED: charged multivesicular body protein 5-like [Musa acuminata subsp. malaccensis]
trEMBLtr|M0T7J1|M0T7J1_MUSAM3.00E-41Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P16430_001}
TAIRAT3G106403.00E-37SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000002679530117973846+
Transcript Sequence

Network for GWHGAAEX007658

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf712757.90E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12198CHMP5, VPS60 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.030
SRR2545915Juvenile tuber33.820
SRP108465SRR5643513five period of Gastrodia elata27.190
SRR5643514five period of Gastrodia elata23.440
SRR5643515five period of Gastrodia elata26.400
SRR5643524five period of Gastrodia elata24.640
SRR5643525five period of Gastrodia elata52.410
SRR5643528five period of Gastrodia elata41.090
SRR5643658five period of Gastrodia elata52.820
SRR5643659five period of Gastrodia elata20.990
SRR5643660five period of Gastrodia elata26.160
SRR5643661five period of Gastrodia elata21.210
SRR5643662five period of Gastrodia elata26.250
SRR5643663five period of Gastrodia elata22.710
SRR5643664five period of Gastrodia elata28.490
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_135.410
SRR6049655Rhizomagastrodiae_C368-T10_good_124.940
SRR6049656Rhizomagastrodiae_C368-T07_good_128.090
SRR6049657Rhizomagastrodiae_C368-T07_good_131.430
SRR6049658Rhizomagastrodiae_C368-T04_good_133.980
SRR6049659Rhizomagastrodiae_C368-T04_good_131.600
SRR6049660Rhizomagastrodiae_C368-T01_good_135.880
SRR6049661Rhizomagastrodiae_C368-T04_good_134.540
SRR6049662Rhizomagastrodiae_C368-T01_good_122.110
SRR6049663Rhizomagastrodiae_C368-T01_good_124.010
SRR6049664Rhizomagastrodiae_C368-T10_good_124.960
SRR6049665Rhizomagastrodiae_C368-T10_good_124.960
SRP279888GastroGastrodia elata tuber 37.27
JuvenJuvenile tuber28.54
Mother_GastroMother tuber of Gastrodia elata 31.16
Mother_JuvenMother tuber of Juvenile 44.58