Gene detail

Detail information of GWHGAAEX007659/evm.TU.scaffold_200.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	1.00E-38	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0192	0	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
nr	gi\|672116150\|ref\|XP_008781231.1\|	0	PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	7.00E-75	Serine/threonine-protein kinase HT1
trEMBL	tr\|M5VIJ7\|M5VIJ7_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ00857.1}
TAIR	AT4G35780	0	ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	33458	125062	-

Transcript Sequence
>GWHTAAEX007659 TTATTTGCTTACTTTCCTGTTGGGACTCCCCATTCTACAAGTTACTAGCCTTTCAAAACGGCTCTTCTTCGCTCCTTTGCACCTATTTCACCTTTTGCTCTCTTTTTTCAGAAGTGCCAGCGATTTCTTTTCTCCATCTTTTCTGAATTCTGAGGACGTTTTTATTGAATGGCGATGGACGCCGTTGAGAGCTCCGGTAGCAGTGCCTTACCGACGACATCCTCCCAGAATCAACAGAAACAACGTAAACTAGAGGTATTTTACGAGGTTTTTCACCGGCTCAAGGACTCAGGCTGCTCCGAGGCACTTTCTCCTTCCTTCGAGGAAGAACTCTGGGCGCATTTCAATCGTCTCCCAGCTCGCTATGCATTGGACGTGAATGTAGAAAGGGCAGAAGATGTATTGATGCATAAGAGATTACTGTTAGAAGCACATAGCCCATCTAGTTGGTTTGTTTTTGATATCAGAACTGTTCAGATGCCACGAGGTGATTCCTTCGGCTGTAATTCACTTGGCGAAAGGAATACTCTCAGCCATCCACCACCGACATTTGGTTCATCAACGAACCTTGAAGGTCTTGCTCTCGGAGCCAGTGGAGAACATACTAAAGATGACGACTCTGTTTCAAATGGCATTTTACCTCTTTCTCGGCCTATGCATGAGATGACATTTTCAACAGTAGACAAGCCAAAGCTTCTAAGTCAGCTAACAGCTGTTCTTGCGGAAATTGGGCTAAACATCCAAGAAGCACATGCTTTTTCAACGAATGATGGCTACTCGTTGGATGTGTTTCTTGTTGATGGTTGGCCTTTCGAGGAAATTGGTCAGCTTAGAGAAAGAGTACAGAAGGAAATACAAAAGTCTTTGAAAGAAGCCTGCCTATCATCTGAACAAGGGCCACTCCTAATGGCAGATGTGCACGTTAACAAGAAAACTTTATCAAACTACATAAAAATTCCTACCGATGGGGCTGATGTCTGGGAAATTGATGCTAGTCTTTTGAAATTTCAGAGCAAATTTGCATCTGGCTCATGTGGTGATCTATACCGCGGCACATATTGTTGTCAGGATGTAGCTATTAAAATTTTTAAGTCAGAACATGTTAGTGTTGACATGCAGCGTGATTTTGCTCAAGAAGTCTATATTATGAGAAAGGTTCGTCACAAAAATGTTGTTCAGTTTATTGGTGCATGCACTAAACCCCCTAGCTTGTTTATTGTGACAGAATTTATGTCTGGAGGGAGCGTGTATGACTATCTACACAAGCAGAAAGCCATCTTTAGGCTGCCTTCTCTGCTCAGAGTAGCAGTTGATGTTTCTAAGGGTATGAATTATTTGCATCAAAATAATATTATACACAGGGACCTGAAGACCGCCAATCTTCTGATGGATGAAAATGAGGTTGTTAAGGTTGCTGATTTTGGGGTTGCACGTGTCAAAACCCAATCTGGCATTATGACTGCAGAAACAGGGACTTATCGATGGATGGCTCCAGAGGTGATTGAACACAAGCCCTATGATCACAAGGCTGATGTATTTAGTTTTGGCATCGTGATGTGGGAGCTTCTTACTGGGAAGCTTCCATATGAATACCTAACACCACTACAAGCAGCTGTAGGTGTATTGAAAAAGGGGCTGAGACCAACCATACCAAAGAATACTCATTTAAAGCTAACTGCATTGATTGAGAAATGCTGGCAAACAGATCCAGCTTTGAGGCCAGATTTCTTGGAAATTTTAGATACACTTTATCATATAGCCAAGGAGGTTTCAGAGAACTCTGAGCAGCAGCACAAGGAGAGGCCATCTAGTGGTTTTCTGTCAGTCCTCAGAAGGAGCCGCTGATTCTTTAGATGTCAAACTCTGGACTTATTGTTATCATCTTCATAGTCATCAACTGTACAGAGTTAAAGATATTTTGATTTAACTTAACCTTTTTGTATCTCAAAAATGCTTAGTTTTTTGTGAGGGGAAGAAACACCTCTGTAATATTTCTTTTTAAGCTGATTTTCTTGGCTTTTTTATAGCTGTATCTCACTTTGTTCTTGTTAAGCTAATTTTCAGAGAGGACTACAATAGTCTCAAGAGACATGCATTAAAGCATCCAATTATACTGTGTTAGTAGATATGTTGCATATATAAAGATAACTTTAGCATTCAATGTAAATTCAGGTGAGTACCTTTACTGATTCAACTAATAGGTTTTGCTGCTAAGGTAATGGATATCATTCTGCATCACAAAGTGCCAC

Network for GWHGAAEX007659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	278	527	3.50E-70

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.060
SRP064423	SRR2545915	Juvenile tuber	15.810
SRP108465	SRR5643513	five period of Gastrodia elata	16.760
	SRR5643514	five period of Gastrodia elata	14.580
	SRR5643515	five period of Gastrodia elata	15.300
	SRR5643524	five period of Gastrodia elata	15.070
	SRR5643525	five period of Gastrodia elata	17.410
	SRR5643528	five period of Gastrodia elata	24.630
	SRR5643658	five period of Gastrodia elata	29.440
	SRR5643659	five period of Gastrodia elata	13.810
	SRR5643660	five period of Gastrodia elata	18.580
	SRR5643661	five period of Gastrodia elata	11.510
	SRR5643662	five period of Gastrodia elata	12.610
	SRR5643663	five period of Gastrodia elata	14.650
	SRR5643664	five period of Gastrodia elata	15.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.770
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.610
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.940
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	23.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.570
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.850
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.570
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.570
SRP279888	Gastro	Gastrodia elata tuber	14.12
	Juven	Juvenile tuber	20.73
	Mother_Gastro	Mother tuber of Gastrodia elata	37.82
	Mother_Juven	Mother tuber of Juvenile	28.69