Gene detail

Detail information of GWHGAAEX007667/evm.TU.scaffold_200.14

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1601	2.00E-103	GATA-4/5/6 transcription factors
nr	gi\|672142119\|ref\|XP_008794912.1\|	0	PREDICTED: GATA transcription factor 27-like [Phoenix dactylifera]
Swissprot	tr\|Q8W4H1\|GAT26_ARATH	9.00E-100	GATA transcription factor 26
trEMBL	tr\|M0SPV1\|M0SPV1_MUSAM	3.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P17880_001}
TAIR	AT4G17570	2.00E-103	GATA transcription factor 26

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	397114	424518	-

Transcript Sequence
>GWHTAAEX007667 CTGCCCACTTATTCACCACCTCTTTTCCTTTTCCCCCACCATTAATTTGATTCCTCCAGTGGTCTTCTTCTTCCTCCATTGGATTACACGTATCTCCGTCCTAAGAAAAAACTTTTTAATCTGTAGAATTTTTTCCCTTCCTGATTTCTTCATTCCTGCTTCTCCACTCTCTTTGCCCTCTTTCTTTCTTAAGTTTCTCTGTGTCTCCTCCGTTCCTCTGCTGTTCTATGGATAGAAAGACCAAGAGCTTCTGCTACGGCCTAGGGTTCTGCTTACAGAAAATCTAAATTTCTTTTTTATGAGAGGAAAAGGCCCTAAGCCCTATAAAGTTTTTTCATAATTTAAGGGCCATGAGAATGCTTTTCTAAAAATATATAGTCAAACTAATTTGAATTTCCCAGAAAATTAAGAAAGAAAGCAATAGGTTTTAATCTTTTTGCTTCGTTAATTTTTATTGGAATTTATACGAGGAGAAAGAAGCAAAATCTTTGGCATGGGAAAACATGGACCTTGCCGTCATTGTGGAGTTACAAGCACTCCTCTTTGGCGAAATGGACCCCCTGAAAAGCCAGTTTTATGTAATGCTTGTGGTTCCAGATGGAGGACAAAGGGTTCTTTGGTAAATTATACCCCTTTGCATGCCCGTGATCCAATTGAATGGGAAGAGCCTAAGGTTGCTAAAATGAAAAGAATTTCTTTTAAGACTAAAGAACATAAATTTTTGAAAAGAAAGCATATGAATGGTTTGGTGGAATGTGAACGTGAAATGCGACTGTCTGAACTAGACCAAAATGTTAGAACCTTTGAAGGGGATGCTAGCAATCGATCTAGCTCTGGATCAGCAATTTCATATTCAGAAAGTTGTGCTAATTTTGGTGCTGCTGACACGAGTGATTGGACAGGTTCATCTCAGTCCAATGCTTGGGATTCTTCACTAATGCCAGTACCATCAAAGAAGAGAAGTGTTATTCATCCAAAACCTTCTCCTGTTGAGAAGCTTACTAAGGATCTGTATTCCATCTGGCATGAACAACAGTCATCTAACCTATCAGGATCCTCGGAAGAAGATTTACTTTTAGAAGGTGACATGCCTATGGGTTCAGTTGAGATAGGACATGGGGGTGTTCTTCTTAGATATCCAAGTTATAAAGCTATAGAAGAGGAATCGGAAGCTAGCTCACTTCCGGTTGAGAATAAGTTAATCAGTGAGGCTTATTCAAGATCTGCATCCTTTCCTGAAAATAATGAAAGTAAAAAAACTCCTTTTACTAACGCTGGCATTGACAAAATGATTTTTGCAGTGAACTTGTCACAAGAGCCTAAGAGGGAGAGTTTGTCACCAGTTGACCGTAGCATTCTAGAAGATAGAGATTCACCTTTGAGGTTTGCTGACCTTAAAGATGTTGTTAGTCTGGAAGTTTTCATGAAACATATGACAGATGATGAGCAGCAGAGACTGATGAAGTATCTTCCTTCAGTTGATACCGTTAAACATTGTGAGAGCCTGAGAAGCATGTTTTCTAGTCCCCTATTCATGGTGAACTTATCCTACTTCCAGCAACTCTTACATGATGGAGTTTTTGATCTCTCCTTTTCTCATTCGAGTGTTGAAGAATGCAAGAATTTGAAGACTGTATTGCTTAATTCTGTGAAATCTAGATGGGTGGATCACTATGGAAAGTTGAAGGATACAAAACATAAGCAGTGCCCTGAAGCAAATGGAGAAAATTGTGCAGATTTTCTTCTACATAGAAGCCTAGCATCCATCAAGAGGACTCGTCAAAATCAAAATGGAGCATTCCAAGATTCTAAGCGAGGCATGAAGAACCCTAAAATAGTGAATAGATCCAACGACACCAAATCTTCTTCCACGAAATCCTCATCACTGATTCCTGGCGAAATCGAATCTGAAGAAACACCGGATGCTGAAGAAATCACAGACAATGAAGGGACTTGCTTCAGCCCAAGGAGCCTCTTCGCATGGCCTGCAGATCCAACAAACACAGAGCTGCAGTTTACGGACGATAGCTCTGATCAAGACTTGCTGCTCAATGTGCGCTGCAGTTCGTCTTTCCCTGAAGCTGAGCTCTTCCATCTTCCCTCTTATACCTCTCAGGTTGAGAGTTGTGTTGTTTCTGAGGAAGAGAGCCTCTGCAACTTTCCTGCTTCTAGTCTTACCTGCCAGCAGCAGAATCAGCATAAATGAACAACTTTTCCATACATATAATATAGCCTTTTTTTCTTTTTTCACATGTGATGACTGTAGACAAGGAACTACCATTTGTGAAGATGGGTGCTGCAATATGTGGGGCTTCCTATCCTCTGATTTGGTATAAAGGTACTATTTTGCTCTGCTCTGCTTCCAGTGTTAACCTGATGGCACTGACATTTCACTGTAATTTGTGGTGCTTCTTCTTCCTTGCATTGTTCATTTTTCAAGGTTTGTTCCTCGAAAAAATTTTATGTTATAAAAAAAGTGAAGTGTTGAGCAAGCGGGATTCAGCATACCCATGCATTTGAATTTTTTAATCTGAACCGTTGGCTCAGAAAATCTCTGTGCATGATATTCATTTTGGGGATTTATTTGGCTCTGCTGGTTTTGGTTTAGGGGAAAAAATTCTATCTGTTGAGGACATTGTTGCACAAAGAGTCCCCAAAATTGTATGCTATGTATTGATTATAAAATCTATATAGAATTTTGGGGATATATGGCTGGAATCTAAGTCCACTATATATATTATGTACCTAATTTAGAGCAACCATTGCTAACATTTCTTTTATTCAACTCTTTTTTGACAATGGCCACTTCTAGGTGACTTTCATAACATTTCTTACAAATATTTTCC

Network for GWHGAAEX007667

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00320.26	GATA	7	41	3.50E-14
PF13919.5	ASXH	286	365	1.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.410
SRP064423	SRR2545915	Juvenile tuber	44.730
SRP108465	SRR5643513	five period of Gastrodia elata	48.090
	SRR5643514	five period of Gastrodia elata	62.690
	SRR5643515	five period of Gastrodia elata	50.620
	SRR5643524	five period of Gastrodia elata	60.250
	SRR5643525	five period of Gastrodia elata	39.050
	SRR5643528	five period of Gastrodia elata	47.310
	SRR5643658	five period of Gastrodia elata	44.510
	SRR5643659	five period of Gastrodia elata	21.420
	SRR5643660	five period of Gastrodia elata	20.990
	SRR5643661	five period of Gastrodia elata	20.530
	SRR5643662	five period of Gastrodia elata	22.410
	SRR5643663	five period of Gastrodia elata	22.880
	SRR5643664	five period of Gastrodia elata	24.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	43.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	52.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	52.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	37.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.850
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	42.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	39.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	48.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	56.840
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	70.030
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	70.030
SRP279888	Gastro	Gastrodia elata tuber	27.98
	Juven	Juvenile tuber	31.40
	Mother_Gastro	Mother tuber of Gastrodia elata	60.04
	Mother_Juven	Mother tuber of Juvenile	67.10