Gene detail

Detail information of GWHGAAEX007668/evm.TU.scaffold_200.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|16331190\|ref\|NP_441918.1\|	1.00E-65	nucleoside diphosphate kinase [Synechocystis sp. PCC 6803]
KOG	KOG0888	1.00E-82	Nucleoside diphosphate kinase
nr	gi\|743778585\|ref\|XP_010919758.1\|	2.70E-88	PREDICTED: nucleoside diphosphate kinase B [Elaeis guineensis]
Swissprot	tr\|P47920\|NDKB_FLABI	1.00E-86	Nucleoside diphosphate kinase B
trEMBL	tr\|A0A068UME6\|A0A068UME6_COFCA	2.00E-86	Nucleoside diphosphate kinase {ECO:0000256\|RuleBase:RU004013}
TAIR	AT4G09320	1.00E-82	Nucleoside diphosphate kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	550397	554694	+

Transcript Sequence
>GWHTAAEX007668 ATATTTTTTAAGCACCAGTCTCTATAAATGTAGAACCAACCCACCTGTTCTCGTCTAGGGTTTCTTTCTGTCGCGTTTCTTTCTGTCGCCGCGACGTATAATAGTATTCCGCTGGAGATCTTTTTAAGAGAAATCATTGAAGATGGAGCAGACCTTCATCATGATCAAGCCCGACGGCGTCCAACGCGGCCTTGTTAGCCGTATCATCGGACGATTCGAGAAGAGAGGTTACTACCTGAAAGGGATGAAGCTGCTGACTGTAGATCGGCCCTTCGCTGAGAAACACTACGAGGATTTGTCGGCTAGGCCATTTTTCGCTGGGTTGGTGGAGTACATCATCTCTGGCCCTGTGGTGGCCATGGTTTGGGAGGGTAAAGACATTGTTGCGACTGGGAGGAAGATGATTGGGGCTACCGACCCTTTAAAGTCTGATCCCGGAACCATTCGTGGCGATTTATCAATTGAAATTGGGAGGAATATTATTCATGGGAGCGATTCAATCGAAGGTGCCAGAAAGGAGATTGCTTTATGGTTTCCTGAAGGTCTGTCCAACTGGCAGAGCAACCTTCACCCCTGGATCTACGAGTAAGGCTTGTCATCAACTCTTCCTTTGGGGGATGGGCTCTGTTTTAATTATCTCAAGAAGACTGATATCTCTTTATTATTAAGAGGGATTATAATTTTGATATCATATTGAGTTTTGTTAACTTTTGTTGTTGTGGTGGCTGGCTTGTTGAAATCTAGTTTTTTGCTAATAAATTATGGGGCTGTTTGCTTTGCTGAATTTTGAGGATAGAGTATTATTTATGAGGTGCAATCTCAAAGCATGGCATTTGTTTTCATAAACTCTGTATCCAGGTAAATCTTTGGGGTATTAAAAATTAATACCACATCTAACCATTTTTTGTGTGATTTGAAAAGCTGTTCAGAGTGAGTGTCTTACACATTTAAAATATGTATTAAAAAACAATCATGGCTTTTTGCTGGCCATTGTCTGCCAATGACAATCTTTGGCGGCTTTTTATCGCATAAAACTCGTACAGCTTTGGTCATATTCAGTCCTAGTCTGGCCCATTGGTTTTTGGTGTTGGCCAACCCATGGTTGGCACTCTTTAACCTTTGGTAGCCATCTCTTGTCAAACATATGCGACTTTTAAGGGTTTTTTAAATTTTAATCGTTTAAAATCAACAAAACAAGCATTTTTAATACTCTATTAAACACCTAAAATTTTAAAATTATTCTCATAACACTTAAATCATTAAAATTCAACAAACGTATCACATAAATGTGATGATTTTTTGTGTGGCATGCACAATTTGTTTTTCTTTTCAAAACACCTTTCCATCTCCTCATTGCTGTCTCCCTACCTTCCGGTTTTTAATTTCCCCTGAGAAAGATTTCAACGATCACTTTAGCCTTGTTGGGGCGGCGGATTCAATATGGTGCCCTAACGGATTTGGATGAAATTAGATTTTATGTGCTATATTTGAAGGATTTTACAGAATTAATGTTATAAGAATATATTTGAAAGTTTAAGTGTTTAATATGTATATTATAAAGATTTTTGGTATTCTACATGTAAAAATGTTTGAATTTCTGAAATGTTTTTTTATACTCTAATGCCTAAAGCGTTTTAAATCAACCACTTCCACTCTTCATCTTGCATTAATTAAAGAGAATTAATCTAAAACAATGTTGAATACAAAATTGGAAGGGATGTCAGACTTTAAAAGAATGCATTTAGACTTTTTTTTTTTTGAAGATTGGTGAGGGCATAGCCCTAATTTTATTGATAATCAGAATGATTACAGAGTAAATTACAAAAACATTAATGAGTTATCTGGCATCAGAAAATTTGAGATTTAAATTTAAACTAACTTGATTACAGTAAAACTTGATTATCATTAAATTCAGATTACTTTGTTTAGTTTGTTAGTTTTACAGGAAACTTAACATTTATTTGTTTGAAATGAAGTAATATGTTGTTTTGAGTAAATTAGGGCGTGAAGTTATCAAAGAAATTTTTTTGTACTTTTTTAGGGTTTGTTCGAATGATTTGTTTCGTCGAATTGAAATGAAATTTTTAGAGGATTCGTTCGAACGAAACAAATTGTATAAATGAACGAATCCTTCGAATCCTTCAAATGAACGAAGGATTCGCCGGAATCATTTATTTGCCGAAATTGTTCATTTGCCGGAGAAGGTAGATGAGATCGCTTGCTTGCTCGGCTACTCCATGTCATCTCCTAATACAATCGATTTGTGCCTTGTTCTTTTATCACGTTTCAATATATATTAACACATAATCAAATTACATTGCAAAACCTTTTTAGGGTTTTGTTCGAACGATTCAAAATGAAATTTTTCAAGGATTCGTTCGAACAAAACAAATTGTATAAATGAACGAATCTCTTGAATCCTTCTAATGAACGAAGGATTCGCCGGAATCATTTATTTGCTGAAATTGTTCATTCGCCTGAGAAGATGGACAAGATCGCTCGCTCGCTCGGCTACTCCGCGTCATCTCCTAATACAAACCGATTCATGCCTAATTCTTTTATCATGTTTCCATATAACACAATAGAATTATTGTGTAAATTTTTTTTGCCCATTTTACTTGCCCAAGTGTTGATAATATCACAGTTTACTCGATAAACTTTTACTTTACACTTGTAAGAATCAAAATCTATGCAACCAATTTCATAACTGACGTTCCTCAAAATTTTTGTGAATAGCACACATAAAAAAAAAATTGTGAAGAAAAACAAGTAACACAAAAGACACTGAAAAAAAGAAGTTGACAGTGTTGGTCTTAGAATAATTTTTTCTTGTAGTAGGTTAAAGGCTAAAAGCTGCTACATCACATACATTTGAGTGTAGTATTTGATGTTGCGTGCCACCTGAAAGGGTAGAAAAAGGTGGTTAGAATCATGAGACAATAGTTTAAAAGTATCAGATATTCTAAAGCTCGCCAGGCAAAGTGAAACTAGGTTAAAGGCTAAAACCTGCAGCAAGAAGATACCAGCAACAGTCCTTAAGATTAATAACATCAAAACAAGCCAACTGCACCCATAAAATTTATAATCGAGGGTATCATTCGAGTCAAAGTTATTTTCTTTTTTTTGTAACAATATCTTCTCAATTTCTAACTATCCATTTAAAGCTCAACATATAAATTTAAACCCTTGAATCTCAACAGAAGCAAATGCTATCACAAAATGCGCAAGCAGGAAACACATGTGAGAGCAGCAAGAATACTCAACAGCACCAGCTTTAGTAATATTATAGAACTAATTACGTTAGAGCTTGAAGTCATTAGTGATGGGGTCGGTAGGGTTATACAAATAATGTCAAACGAACGTTTGAGAATATTGAGTAAACCAAAGATAAAGCAGGAATAGACGCATGCAATCAAACATAGCCACAAGAAAAAATTTACGTGGTTTGGTGCTAGCACTTGTGTCCACAGGAAGGAAGGAAAAATTTTCACTATATGAAGAGGGAGGATTACACTGATTTTAGGGTTTACAAACCCTTACAATCTCACTGAGTTTTTCTTCCTT

Network for GWHGAAEX007668

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00334.18	NDK	2	133	2.80E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00940	ndk, NME	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of antibiotics	map01130
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Drug metabolism - other enzymes	map00983
		MAPK signaling pathway - plant	map04016

Gene Ontology

GO term	Ontology	Name
GO:0006241	Biological Process	CTP biosynthetic process
GO:0006165	Biological Process	nucleoside diphosphate phosphorylation
GO:0006228	Biological Process	UTP biosynthetic process
GO:0006183	Biological Process	GTP biosynthetic process
GO:0004550	Molecular Function	nucleoside diphosphate kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.210
SRP064423	SRR2545915	Juvenile tuber	42.110
SRP108465	SRR5643513	five period of Gastrodia elata	78.090
	SRR5643514	five period of Gastrodia elata	88.080
	SRR5643515	five period of Gastrodia elata	63.810
	SRR5643524	five period of Gastrodia elata	76.480
	SRR5643525	five period of Gastrodia elata	64.610
	SRR5643528	five period of Gastrodia elata	133.960
	SRR5643658	five period of Gastrodia elata	54.550
	SRR5643659	five period of Gastrodia elata	95.130
	SRR5643660	five period of Gastrodia elata	88.060
	SRR5643661	five period of Gastrodia elata	94.300
	SRR5643662	five period of Gastrodia elata	105.340
	SRR5643663	five period of Gastrodia elata	101.430
	SRR5643664	five period of Gastrodia elata	82.330
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	65.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	71.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	78.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	41.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	47.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	34.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	44.530
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	103.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	124.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	124.390
SRP279888	Gastro	Gastrodia elata tuber	119.35
	Juven	Juvenile tuber	49.46
	Mother_Gastro	Mother tuber of Gastrodia elata	48.14
	Mother_Juven	Mother tuber of Juvenile	67.05