Gene detail

Detail information of GWHGAAEX007671/evm.TU.scaffold_200.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|428768762\|ref\|YP_007160552.1\|	2.00E-14	serine/threonine protein kinase [Cyanobacterium aponinum PCC 10605]
KOG	KOG1167	3.00E-112	Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination
nr	gi\|743778890\|ref\|XP_010919908.1\|	0	PREDICTED: probable serine/threonine-protein kinase cdc7 [Elaeis guineensis]
Swissprot	tr\|Q6Z8C8\|CDKF4_ORYSJ	1.00E-12	Cyclin-dependent kinase F-4
trEMBL	tr\|Q336S1\|Q336S1_ORYSJ	0	Protein kinase domain containing protein, expressed {ECO:0000313\|EMBL:ABB47989.1}
TAIR	AT4G16970	3.00E-112	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	648299	661043	-

Transcript Sequence
>GWHTAAEX007671 ATGGAGGCCTCCGGCCCTCAATCCCACCTCCTCTCTCTAAATTTATTGGAGATTGACTCCGCAATGGACCTTCTCACCGCCTTTATTCCGCAGAATAGCCCCGCACGATTGGCGGAGCTTGTCTCAAGTTCAGCACTCGATCCAGTTCACGCGAAGATCCTTTGCGGGATCCTGGGATCCCCGCTTGAGTTTACGTCTGGTGGCTTTATTGATGCATCAGATGAGGTGGTCTCGCCTATTGGCGAATTTCTCTTGAGAGCCGTTGTTGGCTTCGTGCCGAGGGATGCGTTTAGGGTTTCGGGACAGAGGAGAGGCAGGTGGAATCCTTCATGCGTATATTCGCGGAAGAGGAAGGCTCAGAGTTTGGGGAGCACTTCCGTATTATTGAGCTCTAAAAAGAGGTCATTGTTGGCTCATGAGCGAGGCAAAGGGAAGAAAGTTGAAGTACCATATTCCTGGAAAAAACAGTTCATGCTTTTGTCTTTTTCAAATAAAATTTCTGCTATGGTCCTACAGGCAAATTTTGATGTTGCTAGCCCTTCAGGTAGTTATCAGCACTTAGCTGGTCCGGACTCATTTTACTGTAGAGTTATGGGATCAGATAAAACATACAGTTTACAAGTGTCCCTTCAAGAACTGAGTAGCCATGAATTGAGAAACATCAGCTACCCTGGAGAAGGCACCCGGGCAAATTTCACACATATTTCTAGTTCTGGAATTCATGATATCAAATATGCTGATTCCACATCTGAAGACATTTCTCCTGATGTTGAGCTTGATGCTAATTTAATGAAAGAGCAGGCTCATCAGTGTTCAACTGTGATAAAACCAGAATGTAGACCTCTGCAGGATCAGTATTCTTCAATAATTCGCACTCTAGGTGAAGAATGCAACACTCTTTCTCTCAAGTCTATGTTTATTGATGGTTTTCATAAAGAACATGCTATAGAAAGGACAAAAAGACTAGAACCTGATTTTGAGACATTCCTGATGGATCAAATGCCTGATCAGACTGAGTTTCATGAACTAGATTACAATACTGAAAACGTCTCTGCTCTGTTGGATTGTAGTAATAGTAACCATCTTATTATTAACACGACTGATGAGAGAAATTTGTATTCCAAGGATGCTGAATTAATTACTAGTCGGTTAGAGTCAAAAGAAACACTGATTGATTCCATGCCAGGGCACTGCTATAAGAAGGAGACATCATTGTCAAACTATAAAGTTGGCAGCAATGGTGCGGCAACAGAATTTACGTTACAAACCAGATCATGCGATAAACCAGCTGATTCAGCAAAAGACAAACAGTGGACCTTTAACCCACCTTGCAAAAAGAATAATTTTGCTTCAGCTAATCTGCAGAATTTAGTGGGACCAAGTATTGCAAGCAATGGGACCTCTTCTATTAAAAAACCGTATAGAAATGCTGAGGCTGGTTTAGTTGCCAAGCAGAAAGTACAAAATGCTTGCGATGTGAAAAAGACTTATAAACAAAATATGGTGGATGTTGTTGCTAAGCCTATGAAGGACTCATCAGAACAGAAGTTAATGCCAAATTTTGAATCATTTATCATAGAGGAAGAAGAAGGCTCAGGTGGCTATGGCACTGTCTACAAGGCACAAAGGAAAGATGACAGAAAAATATTTGCTGTTAAATGCCCACACGCAAATGCTCATTCACACCATGTCAACAATGAGCTAAAGATGTTGGAACGATTTGGAGGACGTAATTTTGTGATCAAGTACGAAGGCTCTTTTAAGAATGGAGATTCTGAGTGCTTTGTTCTAGAACATGTAGAACATGACAGACCAGAGGTTTTAAAGAAAGAAATTGATATGTTTGAGCTCCAATGGTATGGCTATTGCATGTTCAGAGCACTAGCAAGCTTGCATAAACAGGGTATTGTTCACCGAGATGTCAAACCAGGAAACTTTCTCTTTTCTCGCCAACTTAACAAAGGATATCTCATTGACTTCAACTTAGCAAGTGACCTGCATCAGAAGTTTTGCAGAAGCGGCAAACGGAAGACGCCAAGCGCTGCCATGAATCCAAATCCCCTTCTCGAATCCAAGCCTGTGCCAACCATTCTTTCCCGCAAATTCATCAACCGCGGGCTTCTGGAGATTGCAAAGAAAGAAGCAGCCAACGAACCTAAGAAGGCTATCCCGTCAAAGGCCTCAAAGAAGAAGCCTCACAAAGGCAATATGGACGGCCGTCCCATTGCTGAGAGAAGCAAGCACGGAAGCCAAACAGCAGATGGCTCAGGTCTGACTTCGACAAAGGATCAAACAAGCACAAAGACTCCTGTCGACTGGTTGAAGCAGCCGATGCCTAACAAAGGGAGGAAGGAGCTCATCAACTTTGTGCGTAAGGCTGTAAACAGCCCCCAGAATTTGAAGCCCCTTTCCAATGGCCCTTCCTCACAGAGGAAACGAGTTGCCGCCCCCATGACCAAAACGGATGCCAGGCTTCTAATATTTACTCCCATGCCGTTGCACTCTGCTGGCATTGCTGTTGCTGGCGCTGGCATGCTAAAAAATAAAGCTGGTGGGAAGGCAAAGAGAGAAGGCCCTTGCGTGGGAACGAAGGGCTTTCGAGCTCCGGAGGTAAGTCTTTACCTTTCTTTCTGCTCAAGTCATAAATGTAAAATGCTTGATATGCTTATGATACAGGTATTATTCAAATCTTTCCACCAAGGCTGCAAAATTGACGTATGGTCAGCAGGTGTCACATTGCTCTATTTCATGATCGGGAGGGCCCCATTTGGCGGTGATCCTGAACAAAACATAAAGGAAATTGCAAAGCTGAGGGGCAGCGAGGATTTATGGGAAGTCGCCAAGCTTCACAATTGCGAGTCTTCTTTTCCTGTGGATCTGCTGGAAGTAGAATCGCTGGAATCAATGGAGCTGAGCGACTGGTGCTCAAAGAACACAAAGAGGCCGGCGGAATTCATGGAGCTCATCCCCAGATCGCTTTTCGATCTGGTCGACAGGTGTCTCACGGTAAATCCACGGCTCAGATTATCTGCGGAGGAGGCTTTGATGCACAAGTTCTTCGCCCCCTGCCATGAGAGCATAAGAAGACAGAGGCTGCTGAGGAAACCAGAGTGCCGTGCTGAAACAAACGGTAGCAGTATATAA

Network for GWHGAAEX007671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	528	669	3.50E-25
PF00069.24	Pkinase	896	1020	2.00E-10

Protein Sequence

>GWHPAAEX007671
MEASGPQSHLLSLNLLEIDSAMDLLTAFIPQNSPARLAELVSSSALDPVHAKILCGILGSPLEFTSGGFIDASDEVVSPIGEFLLRAVVGFVPRDAFRVSGQRRGRWNPSCVYSRKRKAQSLGSTSVLLSSKKRSLLAHERGKGKKVEVPYSWKKQFMLLSFSNKISAMVLQANFDVASPSGSYQHLAGPDSFYCRVMGSDKTYSLQVSLQELSSHELRNISYPGEGTRANFTHISSSGIHDIKYADSTSEDISPDVELDANLMKEQAHQCSTVIKPECRPLQDQYSSIIRTLGEECNTLSLKSMFIDGFHKEHAIERTKRLEPDFETFLMDQMPDQTEFHELDYNTENVSALLDCSNSNHLIINTTDERNLYSKDAELITSRLESKETLIDSMPGHCYKKETSLSNYKVGSNGAATEFTLQTRSCDKPADSAKDKQWTFNPPCKKNNFASANLQNLVGPSIASNGTSSIKKPYRNAEAGLVAKQKVQNACDVKKTYKQNMVDVVAKPMKDSSEQKLMPNFESFIIEEEEGSGGYGTVYKAQRKDDRKIFAVKCPHANAHSHHVNNELKMLERFGGRNFVIKYEGSFKNGDSECFVLEHVEHDRPEVLKKEIDMFELQWYGYCMFRALASLHKQGIVHRDVKPGNFLFSRQLNKGYLIDFNLASDLHQKFCRSGKRKTPSAAMNPNPLLESKPVPTILSRKFINRGLLEIAKKEAANEPKKAIPSKASKKKPHKGNMDGRPIAERSKHGSQTADGSGLTSTKDQTSTKTPVDWLKQPMPNKGRKELINFVRKAVNSPQNLKPLSNGPSSQRKRVAAPMTKTDARLLIFTPMPLHSAGIAVAGAGMLKNKAGGKAKREGPCVGTKGFRAPEVSLYLSFCSSHKCKMLDMLMIQVLFKSFHQGCKIDVWSAGVTLLYFMIGRAPFGGDPEQNIKEIAKLRGSEDLWEVAKLHNCESSFPVDLLEVESLESMELSDWCSKNTKRPAEFMELIPRSLFDLVDRCLTVNPRLRLSAEEALMHKFFAPCHESIRRQRLLRKPECRAETNGSSI

Gene family

Gene family	subfamily
Protein Kinases Family	Group-Pl-2

KEGG pathway

KO	Enzyme	pathway	mapID
K02214	CDC7	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.410
SRP064423	SRR2545915	Juvenile tuber	38.060
SRP108465	SRR5643513	five period of Gastrodia elata	22.860
	SRR5643514	five period of Gastrodia elata	23.950
	SRR5643515	five period of Gastrodia elata	19.740
	SRR5643524	five period of Gastrodia elata	22.770
	SRR5643525	five period of Gastrodia elata	10.700
	SRR5643528	five period of Gastrodia elata	11.520
	SRR5643658	five period of Gastrodia elata	13.050
	SRR5643659	five period of Gastrodia elata	31.200
	SRR5643660	five period of Gastrodia elata	31.220
	SRR5643661	five period of Gastrodia elata	32.320
	SRR5643662	five period of Gastrodia elata	19.290
	SRR5643663	five period of Gastrodia elata	23.460
	SRR5643664	five period of Gastrodia elata	17.470
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.570
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	24.080
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	16.170
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.040
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	7.540
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	17.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.270
SRP279888	Gastro	Gastrodia elata tuber	16.44
	Juven	Juvenile tuber	43.89
	Mother_Gastro	Mother tuber of Gastrodia elata	12.90
	Mother_Juven	Mother tuber of Juvenile	27.19