Gene detail

Detail information of GWHGAAEX007674/evm.TU.scaffold_200.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15596766\|ref\|NP_250260.1\|	2.00E-23	major facilitator superfamily (MFS) transporter [Pseudomonas aeruginosa PAO1]
KOG	KOG2533	0	Permease of the major facilitator superfamily
nr	gi\|695042141\|ref\|XP_009408708.1\|	0	PREDICTED: putative glycerol-3-phosphate transporter 4 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O23596\|GLPT4_ARATH	0	Putative glycerol-3-phosphate transporter 4
trEMBL	tr\|I1K0V0\|I1K0V0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G05270.1}
TAIR	AT4G17550	0	Major facilitator superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	672017	699602	+

Transcript Sequence
>GWHTAAEX007674 GGATTTTCTTCCACCGCCCAAAAAACCTCACATCCGACCGTACAATCCACCACCCATTTCCCTGCTTGCCAAGCGGCTCGACTTTCTCGCGCCTAGCAGCATTGGCATCATCTTCGACAGATCTCCCTCTTCCTCTTCGATCTTTAATCCGAGCTTCAGCCATCAATCAATGCGCGGTCACCTACCCGGTGGACTCCGCATCGCCCTTGGCTTCTGCAGGCGAGATTGGAGCTTCTCGACGCACCGCAACGTCGTCCTCCTTCTCACTTTCTTCGCATATGCCTCCTGCCACGCATCCCGCAAGCCCGCCAGCATCGTCAAGAGCGTTCTCAACCCCTCTGGCCTTCGCCGAGGATGGTCTCCATTTGTTGGCCCCGACGGCACCGCCCGCCTCGGTGAGACCGACGTCGCTTTCCTCGCCTGCTACTCTCTGGGTATGTACGCCGCAGGGCATTTCGGAGACCGCCTCGACCTGCGTCTCTTCCTCTCCGGAGGCATGGTGAGCAGCGGCGTCTTCGTCGCTCTATTCGGCATGGGATTCTTCTGGAGCGTCCATGCCTTGCTTTTCTACCTCACGATGCAAATGTTCGCTGGTCTCTTTCAGGCCACCGGATGGCCCTCGGTCGTCGCCGTCGTGGGGAACTGGTGCGGCCAGAGGCGCCGCGGCCTCATAATGGGGGTTTGGAATGCTCACACCTCTATTGGGAATATAAGCGGATCGCTGATTGCTGCAGGCGTTCTTCAGTTTGGATGGGGATGGTCATTCGTTTTGCCTGGAGTTCTGATCGGGCTCGTAGGGGTCGTTGTTTTTTTCTTTCTGGCTGCGTATCCTGAGGACCTAGGGTTCGATCCGCCTAATTGTGCTGGCCGTGGGAGGAATGTAGATGATGAGGAGCGAGGCGAAGGGATGATCGATACTGCGGGAGCAGTGGGATTTTACGAAGCGTTGATGATACCGGGAGTGATTCCTTTTGCTCTCTGCTTGTTCTTCTCGAAGCTTGTGGCTTATACGTTCCTCTATTGGCTCCCTTTTTATCTCGGCGAGACTGCCATTGGAGGCCAATACATCTCAGTGAAGGCTGCAGGGAATTTGTCTACGCTCTTTGATGTAGGAGGAATTTTTGGTGGGATTCTTGCTGGTTTACTTTCTGACCAACTAAATGCTCGCGCCTTTACTGCGGCTTGCTTTATGTATCTAGCCATCCCTTCCCTGTATGCCTTCTACATCTTTGGGCCAACCTCGCGTTACATAAATATCATGCTTATGATGGTCACTGGGCTCTTTGTAAATGGACCTTATGCTCTCATAACAACAGCAGTTTCAGCCGATTTAGGCACCCACAGGTCGCTCAAGGGGAATTCTAGGGCGCTGGCAACAGTTACCGCCATTATAGATGGCACCGGATCTGCCGGTGCAGCTCTCGGCCCGCTTCTCACCGGATTTCTCTCGAGAAGAGGATGGCGTTGGGTCTTTACAATGCTCATGATCGGTGCATTTATCTCAGGCGCTCTTCTCTCTTCTCTAGTCAAATCCGAGATTGAGCACATGTGCAAGCGAAGAAGGCCTTCACCAGCTCATAATACTAGGCAAACTGCTGAAGGATTAGTAACTGTGCCATTTTTGCCACAGAAGGCATCTGATGAGCAATAACTGGCTTCTAACTTGAGCTCTGACATTATACAATAACTCAGGTACTTGAACATAAAAATCTGTCTCTGAAATTAGCAAAAAAAAAAAAAAAGATGGTATCATTTTTGAGTTTTTTGGAAGGTATCAGCTCTTTACGATTTTTTCTATTCTGTTTCTTCTTTTCTGTAAAATTCTCTATTATAATAAGCTGCAGTTGTTGTATCAATCAAATTTTTAATTTTAATTTTTTTATAACGAGTAATTCCTTATGAGTTATGGTCGTATTAAACATAAGGATATGGCAATGCCTAAGCACCTCACCTAGAGTTGGGATAATATAAATTCTTTCATGTACAGCTGGTATATTATTTGGAATTTTTTTTCAATGATAATCCTTTTGGTTTGAAAGTATTTACCTACGACATATGTATGTTCGGCTTGTAAAAATTGAATGTTTTTCTTTTATTTACTGCTCTTGATGAGATAAATT

Network for GWHGAAEX007674

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07690.15	MFS_1	80	388	4.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0022857	Molecular Function	transmembrane transporter activity
GO:0005887	Cellular Component	integral component of plasma membrane
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.270
SRP064423	SRR2545915	Juvenile tuber	4.000
SRP108465	SRR5643513	five period of Gastrodia elata	3.390
	SRR5643514	five period of Gastrodia elata	4.240
	SRR5643515	five period of Gastrodia elata	6.160
	SRR5643524	five period of Gastrodia elata	3.490
	SRR5643525	five period of Gastrodia elata	5.330
	SRR5643528	five period of Gastrodia elata	6.920
	SRR5643658	five period of Gastrodia elata	6.250
	SRR5643659	five period of Gastrodia elata	7.950
	SRR5643660	five period of Gastrodia elata	8.310
	SRR5643661	five period of Gastrodia elata	9.240
	SRR5643662	five period of Gastrodia elata	7.930
	SRR5643663	five period of Gastrodia elata	10.970
	SRR5643664	five period of Gastrodia elata	7.410
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.350
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.540
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	3.830
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.400
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.300
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.010
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.910
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.910
SRP279888	Gastro	Gastrodia elata tuber	6.63
	Juven	Juvenile tuber	5.86
	Mother_Gastro	Mother tuber of Gastrodia elata	7.53
	Mother_Juven	Mother tuber of Juvenile	10.17