Gene detail

Detail information of GWHGAAEX007682/evm.TU.scaffold_200.34

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1032	3.00E-96	Uncharacterized conserved protein, contains GRAM domain
nr	gi\|672158134\|ref\|XP_008798797.1\|	0	PREDICTED: GRAM domain-containing protein 1A isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	1.00E-06	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|M0RUN1\|M0RUN1_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23010_001}
TAIR	AT1G02120	3.00E-96	GRAM domain family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	957812	1045394	-

Transcript Sequence
>GWHTAAEX007682 CTTCAACGCTCGTATTAATTAAGCTAATAAAGACTTGTTAACTTACTGGAGTTCCAGCCATCGTGGATACACACCCCCACGGTTACTCCAAGTTGGAACTGGGTAAGCAGTAACCACCACGATATAAAACAAAATCCATACCAGACGGACATCCTCCTTCAACTCCGTCGCCGTCCAACTCTAGTGCAGGAACCTTAGTTTCCTGTTCCATGGCTGTTGTTCCGCCGGGCAAGGAGAGGATGGAGCCATTGCCGTCGGACTCGGCGCAATCCGCCCGCTTATCGCCCGTCAGGGCGGCGAAATCGGACGGCGATTCTGCTTCAGAGACATTGCCTGCCCACTCTGGTGAAAATTCTGAGAAGAAGGAAGCCGATGTGCTGGTGATATCGGCTAGGAGCGAGGAGTACCGCCTTCTGTTCCGCCTTCCCCCGGATGAGGTCCTCGTTCAGGATTTCAATTGTGCCCTTCAGGAAAATATACTTCTCCAGGGACACTTGTATCTGTTTGTTCATCATGTATGCTTCTATTCTAACATTTTTGGATTTGAGACAAAGAAAACAATTCCATTTCATGAAGTAACATGCGTGAGGAAAGCCAAGACTGCTGCAATTTTTCATAATGCCATAGAAATTGTTGCTGGTGGGAAGAAGCACTTTTTTGGTTCTTTTTTGTCACGTGATGAGGCTTATAAGCTCATTGTGGATGGTTGGGCACAACATGCTGGTGATGCCAGATTCATCATTGATCCTCAGGACTTGAAATCTGAAATCAGCATAGAAGACATTGCAAATGTTATCGCAGAGAGAGAGAATGGATCTAAGCAATATTCTGATGACTTGCCGCCCTCTTGCAGGAAAAGTGATGTAAATTTAGAAGAGTGCACACATCTACCAAATGGTAAAATAGATTCTAGTTTATTAGAACACGGAGTAGAACAAAGTGATAATCAAGAAGAAAATGTTGAGAATCATTCAGAACATGTATCATGGCAATGTGAGGATGTCGATGCTCCCAAGGTTCCAGAAAATTTTGCAGTTGTTGCCCAGGCCAAGTTTCCGGTTTGCGTGGAGGAGTTTTTCAATCTTTTCTTTTCTGACCAATCTTTTAGTTTTGTGGAGCATTTTCATAAAGAATGTGGAGATAAAGATTTTAAATGTACTTCTTGGCATCGGAATGAACAATTTGGATATATCCGTGATGTGTCATTTTTACATCCTGTCAAAATGTATCTTGGGGCAAAATATGGGCGTTGCCTGGAAGCTCAGAAATTCTGTGTTTACAGAAAAAGCCATTTAGTTTTAGAGACGTCCCAAAGAATTGCAGATGTGCCTTATGCGGATTACTTTCTTGTTGAGGGCATATGGGATGTCCAGCAAAATATCGATGAAGAAAATGCATGCACAGTCAGTGTTTATTCAAATGTTTCTTTTTCAAAGAAAACTATATTTAAAGGAAAGATAGAACAATCAACGAGAGAAGAGTGCCGTGAGGTTTATGGTATATGGATACAAAATGCACATGAATTCTTGAAGCAGAAAGTTGGAAACCAAGATGATATGACTGAAGTGCATGATGGAGATACCAGATCACAAACTTCTGATCAAGACGAAACATCCAGGATGCTTCATCAATCTGCATCTTCAGATATGCCACAAATTCTGCCTCGCTCAAAGAATTTGCAGCCACTGATAGAATATGCTGTTAAAGAAAAATCAAGATGGTCCAATTGTGGGTCATCTATTTTAAGAGAATCTTGGATGACTTGCCTTTCGTATTTCAGATCTGATAGTCATCTACTGCTTCTGCTAGCTGTTATAGGTTTGGCTGCAATGTTAATTCTAATGCAGATGAGCATCATTGTTCTGCTGACCCGGGCACCTGAAGTTCATCTTGTTACGCAGGCTGGCTCCAATGGCAGCCTGCGGAATTATAATAGAGAGGAGAATGCAGAGTTACTGGAGAGGCGCTTTAACCATCTTAAAGAGGAAATGGACATTGTAGAGATGAGGCTGGAGGCAATGCGGCGGGAGCATGCGGTTCTAAAGATGCACCTTCAAAGCCTGGAGCAGCCGAAGAAGCGTAAACCGTGAATGCAATGTAGCTAGATAGATATTTATTAGATACACCAGAGATGTTCTTACCAGTTAATATTTTGGTTTATTGTTATTATTTGAAACGAATGGCAAAGTTGTAAATAGAATATTCTTATGAACTATTAATCCCTTTTTGCCACTTCACATACCAACTCATCTAGAATAAATGTTAAGAGCTTCTTGAAGGACATGTAGGAGCATCTTGTAATTATTATTGTTGTTGTTGTGATATGATTGATGCTTTTTAGATTTGTAAGGTGACATTGGTTGAAATATTCAATGTTTTTTCTTATAGGAAAATTCTATATTGCTCTATAAATATATTTCATTGTTCGAATTCAGGGAAG

Network for GWHGAAEX007682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02893.19	GRAM	65	170	1.60E-20
PF16016.4	DUF4782	277	423	4.90E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	66.060
SRP064423	SRR2545915	Juvenile tuber	80.220
SRP108465	SRR5643513	five period of Gastrodia elata	40.920
	SRR5643514	five period of Gastrodia elata	39.340
	SRR5643515	five period of Gastrodia elata	42.990
	SRR5643524	five period of Gastrodia elata	40.820
	SRR5643525	five period of Gastrodia elata	43.300
	SRR5643528	five period of Gastrodia elata	46.150
	SRR5643658	five period of Gastrodia elata	47.380
	SRR5643659	five period of Gastrodia elata	62.810
	SRR5643660	five period of Gastrodia elata	69.730
	SRR5643661	five period of Gastrodia elata	58.080
	SRR5643662	five period of Gastrodia elata	50.470
	SRR5643663	five period of Gastrodia elata	55.400
	SRR5643664	five period of Gastrodia elata	57.450
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	46.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	43.850
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.090
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	38.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.430
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.040
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	41.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	40.780
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.470
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.470
SRP279888	Gastro	Gastrodia elata tuber	38.46
	Juven	Juvenile tuber	44.85
	Mother_Gastro	Mother tuber of Gastrodia elata	34.38
	Mother_Juven	Mother tuber of Juvenile	29.49