Detail information of GWHGAAEX007684/evm.TU.scaffold_200.37


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG16561.00E-22Protein involved in glucose derepression and pre-vacuolar endosome protein sorting
nrgi|586758283|ref|XP_006853757.1|4.43E-27hypothetical protein AMTR_s00056p00189660 [Amborella trichopoda]
Swissprottr|O82197|VP321_ARATH4.00E-23Vacuolar protein sorting-associated protein 32 homolog 1
trEMBLtr|U5CYH8|U5CYH8_AMBTC2.00E-27Uncharacterized protein {ECO:0000313|EMBL:ERN15224.1}
TAIRAT2G198301.00E-22SNF7 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000019812031471219017+
Transcript Sequence

Network for GWHGAAEX007684

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03357.20Snf719911.20E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12194CHMP4, SNF7, VPS32 Endocytosis map04144
Necroptosismap04217

Gene Ontology

GO term OntologyName
GO:0007034Biological Processvacuolar transport

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.930
SRR2545915Juvenile tuber7.370
SRP108465SRR5643513five period of Gastrodia elata2.030
SRR5643514five period of Gastrodia elata3.030
SRR5643515five period of Gastrodia elata2.840
SRR5643524five period of Gastrodia elata3.510
SRR5643525five period of Gastrodia elata3.510
SRR5643528five period of Gastrodia elata4.380
SRR5643658five period of Gastrodia elata4.190
SRR5643659five period of Gastrodia elata5.450
SRR5643660five period of Gastrodia elata5.530
SRR5643661five period of Gastrodia elata5.340
SRR5643662five period of Gastrodia elata6.350
SRR5643663five period of Gastrodia elata5.180
SRR5643664five period of Gastrodia elata4.090
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_12.310
SRR6049655Rhizomagastrodiae_C368-T10_good_12.900
SRR6049656Rhizomagastrodiae_C368-T07_good_12.620
SRR6049657Rhizomagastrodiae_C368-T07_good_12.480
SRR6049658Rhizomagastrodiae_C368-T04_good_12.160
SRR6049659Rhizomagastrodiae_C368-T04_good_12.980
SRR6049660Rhizomagastrodiae_C368-T01_good_13.110
SRR6049661Rhizomagastrodiae_C368-T04_good_12.560
SRR6049662Rhizomagastrodiae_C368-T01_good_12.380
SRR6049663Rhizomagastrodiae_C368-T01_good_12.050
SRR6049664Rhizomagastrodiae_C368-T10_good_12.690
SRR6049665Rhizomagastrodiae_C368-T10_good_12.690
SRP279888GastroGastrodia elata tuber 5.53
JuvenJuvenile tuber3.26
Mother_GastroMother tuber of Gastrodia elata 4.56
Mother_JuvenMother tuber of Juvenile 3.61