Gene detail

Detail information of GWHGAAEX007686/evm.TU.scaffold_200.39

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|672125673\|ref\|XP_008786259.1\|	PREDICTED: protein ARABIDILLO 1-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|O22161\|ADLO1_ARATH	Protein ARABIDILLO 1
trEMBL	tr\|M0RWZ7\|M0RWZ7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P04390_001}
TAIR	AT2G44900	ARABIDILLO-1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000198	1242803	1294279	-

Transcript Sequence
>GWHTAAEX007686 TGAGAAAAAAAAATAAAAATTTACAACAATTAGTACAAATTGATCATCCAAGATCCTAAATACATTCATGAGTAGTCACTAACTTCAAGGTCATTGCCATTGGCTCTAAATGTAGGATGGAGGAAGTGGGGCGGGTCGCTATAAGTTGGATGCAAGACATAAACTCAGCAAGGGCTTTCTCCGTTCCAAACGCCGCCGCACCTCCTCTCCTATCAAATCCCTATCGCTGGTACAGCCGCCAGCCTCCCCGTTGCCAAAAAAATCATCCGATTGCTTTCTTGAAACCCTAGATCAAATTAATCGCCATGCTTTCCTGCTTATCTTGCACGATTAGCGCTGCGGAAACCTTCCAAGCACTTAAATTTCTTTCCCTATAGCCAGATCCTCATAGCGTTGGGGAGATGAGCCGGCGAGTGAGGAGGCGGGGTTCGCAGTCAAAAGGCAAAGAGAAAGTCATTATATCATCTCCGGTGTTCCCTGAAACGGCAGAGGAGTACGAGATATGCCGTCCTGGTCTTGATCTCTCAGATGTTCACAAGGTGGAGTGGACTCGCCTCCCTGATGACACCGTGGTTCAGCTCTTCTCTTGCCTCAGCTACCGCGACCGAGCCTGCCTTGCGTCCACCTGCCGCACCTGGCGCCTCCTTGGTTCCTCGCCTTGCCTTTGGAACTCACTTGATCTTCGCGCTCATCGCTGCGACACAGATACTGCGAGCATTCTCGCATCAAGGTGCGCTAGCCTACGCCGACTCCGATTCCGGGGATCGGAATCAGCTGCTGCCATTATAAACCTCCATGCCCGTGACCTGCGGGAGATCGCAGGTGATTACTGCCGTGACATAACCGACGCAACGCTTTCAGTGATTGCTGCTCGACATGAGGCGCTCCAAAGCCTCCAGATTGGGCCCGATCCGTGTGAGAAAATCAGTAGTGATGCCATTCGGCACGTGGCCATGTGCTGCTCGAGATTGAAAAGGTTGCGCTTATCGGGCGTCCGTGAGATTGATGGTCTCGCAATCGGCGCCTTGGCCAGGCATTGCTCCTGCCTGGAAGAGATTGCTTTTATTGACTGTGGGAACATTGACGAGACCGCCCTTGGAAAGGTGGAATGTCTAAAATTCTTGTCAGTCGCAGGTTCCCGTAACTTGAAGTGGGCATCCGCTGTCACCTCATGGAGCAAGCTTCCAAACCTTGTTGGATTGGATATTTCTAGGACTGATGTTCCCCAGAGTGCTTTGTTCCGACTTCTCTCTTTGTCTAAAAATTTGAATGTTTTGTGCGCTCTCAATTGTGTGACATTAGAAGAGGAGGCTAACCAGAACCCGTTAAGCTCCATCCATGCCAAGGGAAAGATACTTCTCACCCTCTTCACTGATATTTTGAAAAGGATTACCAGTTTTTTTTCAAATTCTGTGATTAAGGAAACTGAGGTTTTTCGAAGTTGGAGGAATCAGGGAAACAAGGATAAACATCTCAATGACATCATAAGCTGGGTGGAATGGATACTGTCGCAGTCATTGCTACGTATAGCAGAGATGAATCCGGCTGGCATGGATGATTTTTGGTTAAGACAAGGTGCTGCATTATTGTTGAGTTTGGTGAATAGTTCCCAGGAGGATGTGCAAGAGAAAGCAGCAGCTGGGCTTGCTACATTTGTGGTAATTGATGATGAGAATGCTACTGTGGATCCGGAAAGGGCAGAGGCTGTCGTGAAAAATGGAGGCATTCCGTTGCTTTTAGAACTTGCTAGGTCATGCAGAGAAGGTGTACAGTCTGAAGCTGCAAAGGCAATCGCAAACTTGTCAGTTAATGCTAAAGTTGCAAAATCAGTTGCTGATGAAGGTGGTATTAGTATCCTTGCTGCCCTAGCACGCTCGACAAACAGACTTGTTGCTGAAGAGGCTGCTGGAGGACTTTGGAATCTTTCTGTTGGAGAAGAGCACAAGACTGCCATTGCTGAAGCTGGTGGTGTTAAAGCTCTGGTAGATCTCATATTCAAATGGCCAACTGGGATAGATGGAGTCCTTGAGCGTGCTGCTGGTGCACTTGCAAATCTGGCGGCAGATGACCAATGCAGTATGGAGGTAGCAATGGCAGGTGGTGTGCAAGCTTTAGTGATGCTTGCAAGGTCATGCAGGGTCGAAGGAGTGCAAGAGCAGGCTGCCCGGGCCTTAGCTAATTTGGCTGCTCATGGCGATAGCAATAGCAACAATGCTGCTGTGGGTTTAGAGGCAGGTGCTCTCGATGCTTTAGTGCAACTGACTTGTTCTCCAAATGAAGGCGTTAGGCAAGAAGCTGCTGGTGCTCTGTGGAATTTATCATTTGATGATAGAAATCGAGAAGCAATTGCTGCAGCTGGGGGTGTTGAAGCGTTGGTTACACTAGCAAATGCTTGTGCAAATGCCTCTCATGGCCTTCAAGAGAGGGCTGCTGGAGCTTTGTGGGGATTGTCAGTATCAGAGGCTAATAGTGTTGCAATTGGACGAGAAGGTGGTGTCACTCCGCTTATTGCTTTGGCACGCTCAGATGCTGAAGATGTTCATGAAACTGCTGCTGGGGCACTTTGGAATCTTGCCTTCTATCCTGGAAATGCGCTTCGCATAATTGAAGAGGGGGGCGTTCCTGCTCTTGTGCATCTCTGTTCATCATCAGGATCAAAAATGGCTCGCTTCATGGCTGCACTGGCACTTGGTTACATGTTTGATGGAAGAATGGATGAGTTTGCGCTGATCGGTTCATCGGCGGAAGGCACTTCAAAGAGCGCTAGCTTTGAAGGCGCAAGGAAGATGGCTCTGAAGCATATCGAAGCCTTCGTTCTTTCGTTCTCGGATCACCAGCTCTTCTCCCTAGCTGTTGCCTCCTCCGCCCCGACAGCTTTGGCGCAGGTTCTTGAAGTTACCCGCATTCAAGAGGCAGGCCATCTAAGATGCAGCGGCGCTGAGATTGGTCGATTTGTAGCCATGCTCCGGAATTCCTCGAGCATTCTCAGAGCCTGCGCTGCCTTTGCTCTGGTGCAGTTTACGGTTCCTGGAGGAAGGCACGCCGTGCACCATGCGAGCCTGCTACATAAGGCGGGAGTGACGAGGGGTTTGCGCGGGGCCGCGGCATCAGCGTCGGCTCCTTTAGAAGCCAAGGTGTTTGCGAGGATAGTGCTCAGGAATCTGGAGCACCATCAGCTGGAAGCTTCTTCCGTGTAAGATTTTTTTTTGTTTTCTTTCTTATAATCACACCGTTCAAAATTCTTGGCACAGCATATAAACAGAACCTGTCTTTCTTTGTCTTCCACCCCCACCTTCCCCTTCAACAAAAAAACATAAGAAAAAAAGAAAAAAATCAAAAGAAATTATATTGCTGCCTGCCTATCCTGCCTCGCCTTGTAAGATTAAGCTTCCCCGGCAAAGAATTGGAAATAATATGATGAAACTGTAGCCTGCAATAGATATGTTAGCTTGTTTGGCTGTCTGTAATCAAGGATTTGGCGAGAGCACGCTGCTTCGCTGTGTTGTTATTATTATTGTTATTATTTAATTATGATTAATATTATGTAAATGGTGCTGGGTGTTCTTGAGTGGACCAGTGTCTGTCGAGTTTTTTGCACTGTTTATAAGTGTGTATTTTTTTGAGAGCTGGAAGCGGGCTTTTTTATTGTACCATGATATTATTATTTCTATTCTTTTTTTGTGGCCAAGTAAACACATTTGTTAGGTGCATTCAACTTCAATGGTGTGCCTTTTAATTGCTTAGAATGAATAGTTTATGAATATATATAACAGCAGTTTTATGAATGAACATTAGTGTTTATTTTGATATGTAAGGTTTTTCGAGTGCATCGTTTATTGTGCCAAAATCATTCTTGAAGTTTTCTTATCTAAATAGCAAATGAACCTTATTAAAAAGATTTT

Network for GWHGAAEX007686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12937.6	F-box-like	49	95	1.40E-06
PF00514.22	Arm	430	468	9.50E-06
PF00514.22	Arm	474	509	0.00022
PF00514.22	Arm	512	554	1.10E-06
PF00514.22	Arm	556	596	3.30E-07
PF00514.22	Arm	603	640	5.60E-09
PF00514.22	Arm	642	684	2.10E-05
PF00514.22	Arm	689	725	1.10E-07
PF00514.22	Arm	730	766	0.00016

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	21.260
SRP064423	SRR2545915	Juvenile tuber	16.410
SRP108465	SRR5643513	five period of Gastrodia elata	26.260
	SRR5643514	five period of Gastrodia elata	23.230
	SRR5643515	five period of Gastrodia elata	22.790
	SRR5643524	five period of Gastrodia elata	21.590
	SRR5643525	five period of Gastrodia elata	25.550
	SRR5643528	five period of Gastrodia elata	22.580
	SRR5643658	five period of Gastrodia elata	26.020
	SRR5643659	five period of Gastrodia elata	31.030
	SRR5643660	five period of Gastrodia elata	31.570
	SRR5643661	five period of Gastrodia elata	32.430
	SRR5643662	five period of Gastrodia elata	32.320
	SRR5643663	five period of Gastrodia elata	26.230
	SRR5643664	five period of Gastrodia elata	31.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.830
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	32.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	38.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.720
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.140
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	28.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.340
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	25.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	25.250
SRP279888	Gastro	Gastrodia elata tuber	29.33
	Juven	Juvenile tuber	52.07
	Mother_Gastro	Mother tuber of Gastrodia elata	19.51
	Mother_Juven	Mother tuber of Juvenile	30.43