Detail information of GWHGAAEX007697/evm.TU.scaffold_201.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|386714222|ref|YP_006180545.1| | 8.00E-55 | MFS-type transporter [Halobacillus halophilus DSM 2266] |
| KOG | KOG0254 | 6.00E-156 | Predicted transporter (major facilitator superfamily) |
| nr | gi|514822855|ref|XP_004986088.1| | 0 | PREDICTED: hexose carrier protein HEX6-like [Setaria italica] |
| Swissprot | tr|Q07423|HEX6_RICCO | 2.00E-178 | Hexose carrier protein HEX6 |
| trEMBL | tr|K4A8L3|K4A8L3_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si035219m} |
| TAIR | AT1G11260 | 6.00E-156 | sugar transporter 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000208 | 125856 | 128011 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX007697
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 28 | 492 | 2.30E-96 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 42.520 |
| SRR2545915 | Juvenile tuber | 3.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 51.560 |
| SRR5643514 | five period of Gastrodia elata | 16.270 | |
| SRR5643515 | five period of Gastrodia elata | 15.520 | |
| SRR5643524 | five period of Gastrodia elata | 5.290 | |
| SRR5643525 | five period of Gastrodia elata | 92.520 | |
| SRR5643528 | five period of Gastrodia elata | 29.890 | |
| SRR5643658 | five period of Gastrodia elata | 50.860 | |
| SRR5643659 | five period of Gastrodia elata | 5.020 | |
| SRR5643660 | five period of Gastrodia elata | 9.540 | |
| SRR5643661 | five period of Gastrodia elata | 4.860 | |
| SRR5643662 | five period of Gastrodia elata | 39.750 | |
| SRR5643663 | five period of Gastrodia elata | 11.480 | |
| SRR5643664 | five period of Gastrodia elata | 36.310 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 115.620 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 166.590 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 78.150 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 209.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 222.820 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 298.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 187.160 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 221.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.430 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 52.700 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.08 |
| Juven | Juvenile tuber | 70.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.80 | |
| Mother_Juven | Mother tuber of Juvenile | 19.76 |