Gene detail

Detail information of GWHGAAEX007699/evm.TU.scaffold_201.9

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|433653951\|ref\|YP_007297659.1\|	1.00E-37	DNA/RNA helicase, superfamily II, SNF2 family [Thermoanaerobacterium thermosaccharolyticum M0795]
KOG	KOG0385	0	Chromatin remodeling complex WSTF-ISWI, small subunit
nr	gi\|743778344\|ref\|XP_010919631.1\|	0	PREDICTED: chromodomain-helicase-DNA-binding protein 1-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q7G8Y3\|ISW2_ORYSJ	4.00E-57	Probable chromatin-remodeling complex ATPase chain
trEMBL	tr\|K7WHU1\|K7WHU1_MAIZE	0	Uncharacterized protein {ECO:0000313\|EMBL:AFW89900.1, ECO:0000313\|EnsemblPlants:GRMZM2G049168_P02} (Fragment)
TAIR	AT2G44980	0	SNF2 domain-containing protein / helicase domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000208	139894	164635	-

Transcript Sequence
>GWHTAAEX007699 GCTAAATCTTTTGCTAATTAATCCAGGAATAAGCATTATTCCCAATGCGCCAGAATTTTCACCATTTAATTGCTTTCTTACGCTCTATTAATGACATTTTTCTTTTAAATTTATGGGTAACGAAAAATGGTTGGAAATTTTGTTTTTTAAAACTAAATTTGGTAGTTTGGGGAATGAAAAACGGAATTTAGCACGAAATGATGAACTAAATAAATATAGTGAATTTCTTGTTTAGAATTTATAGTTTTATTTGGATTAGTTATAGTTTTAGTGTATTTTAATGTCATTTCAGTCATGAAAAGATCAAATTGTAACTAAGGAGGAAATTGTATGAAAATGAACATTTCAGCATGCTACAGCGCATCACGGCGTGCCAGGTCACCCGACATCCAGAAAGAAAGGCGCCATAGCGCCCGACTCCTTGAGGGAAAGGCATCATTGCGCGCCATAGCGTCAAACTCCCAGAAGGAAAGGCGCCACAGTGACAAAATTCCATAAGGAAAGGCACTGCATTGCCAAACTTCCAGAGAGAAAGGCACTATAGCGCCTACCTCTTAGAGGAAAAGGCACCACAGTACGCCATAGCACCAGACTTTCAAAGGGAAAGGCGCTATAGCGCGCCATATCGCCATACTCTCAGAGGGAAATGCGTCATAGCGCGCTGTAACGCCAGACAGACCGAAATCTTAGCTCTATAGTGCATGTTAAACCCTAACTCTCTCCAATTTTTTCAAATTGATTCTAAACCAAAGTAACTTAAGATTGATAATCTAGAAACACAAAATCAAATAAATCATTGCTTAAACATTATTGAAAGTGGATAAACTCTAGTAACAAATCACACATCGTTCTCAGAGTACAATAAATCTCGGGATCTCACCATCCCATATTACTTAGAACTACGCACACTTGCATGCAAGCTCAGATAACGTAATTTAGGTCTGTCACGAAACATACAAACAACGAATTCGAGTGGGAAAATTTGGTGTTTCCCAGCGCTGACTTTATGTTGAATTGTCCTTAGTTAAATGTTTGATGGCTAGTTGATCTAACTAACCCTATATGAACATCTAAATTTTTTTTTCCATAGTTGATTTAGTTGATCCCATTGAATATTTTTAAGTGGTTATTTTGATTCCAAGTAAGCTCATGTGATTTAGTTGAATCATTTGAATTAAATATTTGATTTCTAGTTTATCTGAGTGGTTCTAGTCAAGTTGTATTAATCTAACTGAATTGATTCCTAGTAGATCTAAAAAATTCTAGTTGATTCATTTCAATTTTAAATTATTTAATTGTATATGATCCAACTAATCCTTGTCAAATTAGAAATCTTCAAATACAGATCTAAACAAATCTTGATCTGTTGATCGGGGAATGTCTAATCTAAACAAACCCTGTCAAGAAAGTCTACTACAGGAAACCTACTCTAAATGGTGGAAATTTTAACACTTTTCTAAGCAAGCATAGTCTTATCACATCTCAAGCCAAATCATATTTTGAGCCTTAAGCAAACTTTTTATTGAAAGAACTTTCCTACAAATAAATGTGGTAATTAATTGTGGGTCTTGCACCTGTTGGAAGTTATATAACTGAAATCTAAATATACCTTGATCTACATATCAGGGAAAGTGTGGTTTATATATTCAAAATCTATCTCAAGAAAAGACTCTTAATACCCATGAAGGGATGAAAGTGGTTTTTTTGCTTTCTTCTTGGCAATCATCATTATCATTATCAATTTATTTGAGCATGATTTTGTACTTTTAGCTATGCCAAAGTCATCAGAACTTTTGTTTGCTTTATTATGATAGTGTTGCCCTTGGAATTTGTCAACTCCTTTTGATTGCTTGTGATTTTATAGTGTTTATGTAGTGAGTTTTTAGTCTTTAAAAAGGATTTCTTGAGCAAGGGATTGCTAAATGCTTGATTTTTGGGTGAAAAATGTAAGATTTTAATTTAGTTCTCTTACCTTTTTTCTCTTGGGAGAACAAACTACTGGCTTTTGAAAATCTTGACTCAAATACAACTTCGGACAGCATAATATATCTGGCCTTTAATATTTTCTTATTTATATTTCAACCTCTTAAATTAAGAAAATTTCTTTGTTTTATGTTACCATTTCAAGGACAAAATTCAGCTAGATCCAAAGAACAGCTTAGACTTTTGAAACATGTGCTAAAAGCATTTATGCTTCGGAGGACAAAAGCAAAGCTTATTGAGAGAGGAACCCTGGCACTTCCTCCACTCACAGAGATTACTGTATTGGTGCCACTTGTTGCTCTCCAAAGGAAGGTCTACATGTCAATACTGAGGAGGGAATTACCTGCACTTCTTTCACTTACATCTGGGGCGTACAGTCATCAGTCTTTGCAAAACACTGTGATGCAGCTTCGCAAAGTATGTAGTCATCCTTACTTGTTTAATGGTATTGAGCCAGAACCATATGTGGAAGGAGAGCACCTTGTTCAGGCAGCTGGTAAACTTCTTGTTCTCGATCTACTTCTTCAGAAACTTCATGCAGATGGCCATCGTGTTCTTATTTTCGCTCAGATGACTCGCACTCTTGACATTCTTCAGGACTTTCTGGAACTTCGGAAATACACCTATGAACGTCTTGATGGATCTATTCGTGCTGAAGAGCGCTTTGCTGCAATAAGGAAATTTGGCCTTAGCCTTGCCAGAGATATGGAACCTCAAGTTAAATATGATGGTGCGTTTATATTCATGATCTCAACGAGAGCTGGAGGTGTTGGACTTAATCTTGTCGCTGCAGATACAGTTATATTTTATGAGCAAGATTGGAATCCCCAGGTTGACAAACAGGCTTTGCAACGCTCCCACCGCATTGGCCAAGTTAATCATGTACTATCTATAAATCTTGTAACACAAAACACAATCGAGGAGGTCATAATGAGGCGAGCTGAGAGGAAGTTACAGCTCAGCAACTATGTTATGGCGAAAGAAGTTGAGTACAATAAAGCAGCAGGGAAGGATGCCTGGATTGATGGTAAAGACATGCGATCTCTTATTCTTGGTCTACAAGTTTTTGATCCCACAGATAGTAACGTCAATAATTTCAACGTGGAAAACATGATGGAATTGAGTGCAATGACAGAAAAAATAGTTCAGCTGCGCAATTGTGAGCTTTCAAACAAAGGCGATGCCATTTATGAAATTAACCCCACAGATGTTTTGAACCATTGTGATTCTGTTAGGAAAAATGTTTCTTCCTTCAATTTAGATATTGGACTTGACGAAACCTCTTATCTATCTTGGATTGAGAAATTCAAAGAAATTTCACCGCCTACTCAGAATTCTGTTGACCAAATTCGAAGAAAGAAATATTCATTGGAAGAAAGGCATCTAAAACAAGAAGCTGATAGAAGAAAGGCAGAAGAGAAGAAACTGGCCAGATGGGAAGCCTTTGGCTACTATTCATTAGTTGTTAAAGGGCTTGAAGTCATAGCTGAGAATGACTTGATATCAGATTCTGGATCTGTTCAATTTGTGTATGGTGACTGTACAAAACCCAACAGAATTTGTCCGTCGGAATCTGCTATTATTTTCAGCTGCGTGGATAATTCTGGGAATTGGGGTCATGGAGGCATGTTCACAGCATTGACGAATCTCTCTACAAGCATTCCGGATGCTTTTCATCGAGCTTTTGAATTTGACGATCTTCATATGGGTGATCTGCATTTAGTGAAGTTAAAAGAGCCAGATGGTGACAGCGGGGCCTTTCTATGGGTGGCCTTAGCAGTTGTGCAGTCATACAACTCGAGAAGGAAGGTTCCGAGGAGCGGTATCTCCATTGAGGATTTAGAAACTTGCCTCTCAAAAGCCTCAATATCTGCCTCTCAAAATTCAGCATCCATTCATATGCCGAGGATTGGTTATCAAGATGGGTCTCAGCGGTCGGAATGGTATACAATAGAGCGACTTCTGCACAAGTATGCATCGCTACATGGCATTAGCATCTTCGTTTATTATTATCGGCGCACCGAACGCAGAGAGGCCGAGGAAACCGCCGTCTTCAGAGCCCACTGATGCCTTTCAGAATTTGCTTTTTTTTGCACAAATTTTTCTGAAACTTTAGTGGGAATTCATGTTGAATCGTGTTGAGCCGTATCATTTTCCAGCTATTGTTGATGAGGTCCTTGAAACGCCAAAGCTGGTGCTCAATGATTTTGGCTCGGGGCTTCAGTCTCTTCTTTGTAAGAAAGGACTTCATTTTTAAGTTCTTGCCCGTGCGCACGCACATACATCCGCACGCGCTCACTAAGGATTTCCCTTATAATGCGAGTTCATGTGTGTGATCGTCGAGCTCTCAGTAATATCATCCCA

Network for GWHGAAEX007699

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	10	103	1.10E-07
PF00271.30	Helicase_C	128	247	2.90E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.460
SRP064423	SRR2545915	Juvenile tuber	7.660
SRP108465	SRR5643513	five period of Gastrodia elata	7.010
	SRR5643514	five period of Gastrodia elata	8.130
	SRR5643515	five period of Gastrodia elata	6.820
	SRR5643524	five period of Gastrodia elata	7.920
	SRR5643525	five period of Gastrodia elata	8.080
	SRR5643528	five period of Gastrodia elata	8.100
	SRR5643658	five period of Gastrodia elata	8.000
	SRR5643659	five period of Gastrodia elata	7.830
	SRR5643660	five period of Gastrodia elata	9.120
	SRR5643661	five period of Gastrodia elata	8.580
	SRR5643662	five period of Gastrodia elata	7.800
	SRR5643663	five period of Gastrodia elata	8.030
	SRR5643664	five period of Gastrodia elata	9.300
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	6.870
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.080
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.490
SRP279888	Gastro	Gastrodia elata tuber	10.86
	Juven	Juvenile tuber	14.20
	Mother_Gastro	Mother tuber of Gastrodia elata	22.94
	Mother_Juven	Mother tuber of Juvenile	18.43