Gene detail

Detail information of GWHGAAEX007701/evm.TU.scaffold_201.11

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|434387423\|ref\|YP_007098034.1\|	2.00E-41	lignostilbene-alpha,beta-dioxygenase-like enzyme [Chamaesiphon minutus PCC 6605]
KOG	KOG1285	0	Beta, beta-carotene 15,15'-dioxygenase and related enzymes
nr	gi\|743829381\|ref\|XP_010934132.1\|	0	PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Elaeis guineensis]
Swissprot	tr\|Q7XU29\|CCD7_ORYSJ	0	Carotenoid cleavage dioxygenase 7, chloroplastic (Precursor)
trEMBL	tr\|D0UDC1\|D0UDC1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g090660.2.1}
TAIR	AT2G44990	0	carotenoid cleavage dioxygenase 7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000208	226982	232063	+

Transcript Sequence
>GWHTAAEX007701 GGTAGAGAGTTTGGCATATTCTTTGAAAAAATAAAAATAAAAAAATCTATAAAAGCCTGTTCCCCATTCTCTACTAAGCAGCAATTGAGAGCAGAAAAATGGAGGCAGCTTCATCTGGTGCTCTCCCCCAAATCTTGGCGCGGCAGGCCGCATCGAAGGGCACGGTGGTTCCCCTTAGGCTGCCTCGCCGGCTTCCGAGCGCCTCCGTCTCTTCCGACGCACAGGTGCTGCATACTCCGGCGACGGAGGCTCCTCTGAGGCCGGCTACCGACAGCGCTGCCAAGTCCTTCTGGGACTACCAAATGCTCTTCCTCTCGCAACGAACGGAGACGGCAGAACCGATCCCGCTGCGCATCACGGATGGACGGGTCCCACCGGAGTTCCCGCTGGGCACGTACTTCCTGGCCGGCCCAGGAATCTTCTCCGACGACCATGGGTCAACGATCCACCCGCTGGACGGGCACGGGTACCTGCGCGCCTTCGAATTCTGCGCTGGAGGGGCGGTACGGTACTCGGCCAGGTACGTGGAGACAGAGGCAAAGAAGGAGGAGAGAGAAGAATCCACCGGGAAGTGGCGCTTCACCCACCGCGGCCCCTTCTCCGTGCTTAAGGGCGGCAGGAGGATCGGAAACGTCAAGGTCATGAAGAATGTCGCCAACACAACCGTGCTTCGATGGGGCGGCCGCCTGTTCTGCATGTGGGAGGGAGGCGATCCTTATGAGATCGATGCCGCCACCATGGCCACCATCGGATCCCTTGATTTGATCTCCCGCCATTCCGATCATCAGCTTTCCCGCCCTAGATTCCCTCTGCAGTTTGGCGAACTGGCCTTGAACGCCGCCTCCGCTCTGCTCAGCCCCCTCTTGCGCGGTGTTTTCAAGATGCCTCAGAAAAGAGTGCTGTCGCACTATAAGATAGACTCGAAGAGGAAACGGCTGCTCATCGTTTCGTGCAATGCCGAAGATATGCTTCTCCCTCGCTCCAATTTTACTTTCTACGAGTACGACGGAAACTTGGAGGTGAAGCAGAAGAGAGAGTTCACCATTCCTGACCATCTGATGATCCACGACTGGGCTTTCACCGACAACTATTACGTGCTGATCGGGAACCGCGTGAAGCTGGATCTCCTGGGAACGATGCTAGCCGTGTCCGGCCTCTCTCCCATGATTTCGGCGCTGTCGGTGAATCCCAGTCAAGGCAAAACCCCCATCTACCTGCTCCCCAGATTCGAAAGCCGATCGAAGAGGGATTGGAAGGCTCCCATTGAAGCACCCTCCCAGCTCTGGATCTCCCACTTTGCCAATGCCTTCGAGGAAGACGAAGGCCCCGACGGCGTCCGCATTCAGATCCACGCTTCCGCCTGCTCTTACCGCTGGTTCGACTTCAAGAGGATCTTCGGTTATACGTGGGAGACTGGGAAGCTGGATCCGTCCTTCATGAACAAATATGAAGGCAATGAGTCCGAACTCTATCATCTGGTTAAGATCTCTGTTGAATTGGATGCAAGAGGAGAGTGCCGGTCCTGCAGCGTGGGCAACTCTTCGAGCAAATGGAGCTGCCCGGCGGACTTCCCGGTGATCAACAGAGACTTCGTCGGGACGAGGAACAAGTTCATGTATGCCAGCACGGCTTCGGGGACGAGGCGGTTCTTGCCGCATTTCCCCTTCGACTCCGTGGTGAAGGTCAACGCCGTCGACGGGTCCGTCTCCACGTGGCGCGCCGGTGAGGGGAAGTTCATCGGAGAGCCCGTCTTTGTCCCCAAAGGAGCTCATGCATCTCAGGAGGACGATGGATATCTTCTGCTTGTGGAGTACGCTGTTTCGAATCTGAAATGCTATCTGGTAATATTGGATGCCAACAGAATCGGGAGGGGTAATGCGCTTGTGGCCAGGCTCGAAGTTCCGGAGCATCTCTACTTCCCTCTCGGTTTTCATGGATTTTGGGACGCATTCACTCACTGACTAAACCGTACTCTAAATTTAGAGAAAATACTATTTAAACAGCTGTTATAATATTTTATCTTATAAATGATGTTTACCCTTGGGATATTTCAGAAAATTCTTCAAAAATATAATAGAGA

Network for GWHGAAEX007701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module7

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03055.14	RPE65	73	615	5.70E-88

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17912	CCD7	Biosynthesis of secondary metabolites	map01110
K17912	CCD7	Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	Biological Process	oxidation-reduction process
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.730
SRP064423	SRR2545915	Juvenile tuber	1.570
SRP108465	SRR5643513	five period of Gastrodia elata	4.370
	SRR5643514	five period of Gastrodia elata	10.690
	SRR5643515	five period of Gastrodia elata	4.080
	SRR5643524	five period of Gastrodia elata	11.430
	SRR5643525	five period of Gastrodia elata	0.040
	SRR5643528	five period of Gastrodia elata	0.190
	SRR5643658	five period of Gastrodia elata	3.350
	SRR5643659	five period of Gastrodia elata	8.000
	SRR5643660	five period of Gastrodia elata	6.880
	SRR5643661	five period of Gastrodia elata	6.740
	SRR5643662	five period of Gastrodia elata	4.920
	SRR5643663	five period of Gastrodia elata	4.190
	SRR5643664	five period of Gastrodia elata	3.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.770
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.030
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.130
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	13.700
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.020
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.020
SRP279888	Gastro	Gastrodia elata tuber	9.49
	Juven	Juvenile tuber	38.88
	Mother_Gastro	Mother tuber of Gastrodia elata	6.63
	Mother_Juven	Mother tuber of Juvenile	10.62