Detail information of GWHGAAEX007702/evm.TU.scaffold_201.12


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|183221915|ref|YP_001839911.1|5.00E-45bifunctional Sodium:alanine symporter/phosphatidylserine decarboxylase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)']
KOGKOG24201.00E-132Phosphatidylserine decarboxylase
nrgi|743778316|ref|XP_010919616.1|0PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial [Elaeis guineensis]
Swissprottr|Q10T43|PSD1_ORYSJ0Phosphatidylserine decarboxylase 1 alpha chain (Precursor)
trEMBLtr|A0A059C236|A0A059C236_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW71955.1}
TAIRAT4G167001.00E-132phosphatidylserine decarboxylase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000208281341334080+
Transcript Sequence

Network for GWHGAAEX007702

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02666.14PS_Dcarbxylase1564299.60E-59
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01613psd, PISD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycerophospholipid metabolismmap00564

Gene Ontology

GO term OntologyName
GO:0008654Biological Processphospholipid biosynthetic process
GO:0004609Molecular Functionphosphatidylserine decarboxylase activity
GO:0005739Cellular Componentmitochondrion

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.750
SRR2545915Juvenile tuber8.790
SRP108465SRR5643513five period of Gastrodia elata22.740
SRR5643514five period of Gastrodia elata25.420
SRR5643515five period of Gastrodia elata24.500
SRR5643524five period of Gastrodia elata26.010
SRR5643525five period of Gastrodia elata6.920
SRR5643528five period of Gastrodia elata5.510
SRR5643658five period of Gastrodia elata4.850
SRR5643659five period of Gastrodia elata7.990
SRR5643660five period of Gastrodia elata7.290
SRR5643661five period of Gastrodia elata8.820
SRR5643662five period of Gastrodia elata9.690
SRR5643663five period of Gastrodia elata7.880
SRR5643664five period of Gastrodia elata5.740
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.890
SRR6049655Rhizomagastrodiae_C368-T10_good_136.860
SRR6049656Rhizomagastrodiae_C368-T07_good_119.700
SRR6049657Rhizomagastrodiae_C368-T07_good_114.720
SRR6049658Rhizomagastrodiae_C368-T04_good_110.070
SRR6049659Rhizomagastrodiae_C368-T04_good_18.410
SRR6049660Rhizomagastrodiae_C368-T01_good_112.770
SRR6049661Rhizomagastrodiae_C368-T04_good_113.420
SRR6049662Rhizomagastrodiae_C368-T01_good_120.270
SRR6049663Rhizomagastrodiae_C368-T01_good_116.190
SRR6049664Rhizomagastrodiae_C368-T10_good_122.500
SRR6049665Rhizomagastrodiae_C368-T10_good_122.500
SRP279888GastroGastrodia elata tuber 7.60
JuvenJuvenile tuber47.85
Mother_GastroMother tuber of Gastrodia elata 42.44
Mother_JuvenMother tuber of Juvenile 39.27